Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03374 ATGGCGCAGAATGTTTCTGTCCCTCTCATCCTCCCAAACCCACCCACAGCCTCACCGTCAAACACCACATTCCCAAAAACCCTAACCCTAACCCCTCTTCTCCAAGACCTATTTTTTAACAAAAAACCCTCTTCTTCGCCTCGTCTACACGTCAGCACCTCCACCCACCCCACTCCCCGCCTCTCACCTCAGGCTCACCGAATTCTCCAAACCCTAATCCATCCTTCCTTCGATTCCAATAGCTTCCACCAAATCTTACCTCCCCTATTCCACCAACCGGCTTCTTCCTCTCTCTCCTCTGACATTCTCGGCATAATCAAGGCTTTAGGGTTTAACAACAAGTTCGACCTCGCATTGTCCGTCTTCGATTTTATTCGAACCCGAAACGACCTCGTTTCGCTCTTGAACGGTTCCGTAATTGCCGTGATTGTCACCCTTCTCGGTAAAACGGGTAGGGCTTCCCACGCGGCGTCGCTGCTGCACGATCTAGAAACCGACGGGGTTGAGGTTGATGTGTATGGCTACACTTCTCTCATAACTGCTTATGCAAATAATAGAAAGTACAGAGATGCACTCAAGGTGTTTGGCAAAATGAAAGAAGTGGGGTGTGAACCCACCTTGATTACTTACAATGCAATTTTGAATGTTTATGGGAAGATGGGCGTGCCTTGGACTAAGATCATTGCTCTTGTTCAGGATATGAAGTGCCGTGGCCTTGCCCCTGATTTGTGTACTTACAATACCCTTATAAGTTGTTGTAGGGCGGGTTCTTTGTATGAAGAGGCTCTTGATCTTTTCGAGGAGATTAAGGTCGCTGGATTTACACCTGATGTGGTTACTTATAATGTGTTGTTGGATGTTTATGGTAAGTCCCGGAGGCCGAAAGAAGCCATCGAGGTTCTGAAACAGATGGAGCTGGATGGTTTTCTGCCTAGCGTTGTTACTTACAACTCGTTGGTGTCGGCTTATGTTAGAGGTGGTTTGCTCGAGGATGCCTTGGAGCTTAAGTGGAAAATGGTGGAGAAAGGGATTAAGCCTGACGTTTACACTTATACTACGCTTTTGTCAGGGTTTGTGAAAGCGGGGAAAGATGACCTCGCAATGGATGTTTTTGGGGAAATGAGAGATGTGGGGTGCAAGCCTAATATATGCACCTTTAATGCGCTTATTAAGATGTATGGTGACAGAGGAAAGTTCGAGGAAATGGAGAGAGTTTTCAAGGAGATCAAAGTGTGCAAGTGTTCCCCTGATATTGTTACTTGGAATACACTTTTGGCAGTTTTTGGACAAAATGGAATGGACTCTGAAGTGTCGGGAGTTTTTGAAGAAATGAAGAGAGCTGGGTTTGTGCCGGAGAGGGACACCTTCAACACTCTGATAAGTGCGTATGGCAGGTGTGGTTCATTTGACCAGGCTATGTCTGTTTATAAGAGAATGCTGGAGGCTGGAGTGAGTCCTGATCTTTCTACTTACAATGCTGTTTTGGCAACATTGGCTCGAGGAGGGCTTTGGGAACAATCTGAGAAAGTACTTGCTGAAATGAAAGATGGTGGATGTAAACCTAATGAGGCAACATATTCTTCTTTGCTCCATGCCTATGCCAATGGAAGAGAGGTTGAAAGGATGAATGCTCTAGCAGAGGAAATATACTCTGACAGAATTAAAACCCATACTGTTCTTTTGAACACACTTGTTCTAGTAAATAGCAAGGTTGATCTTGTAGAACAAACTGAACGTGCATTTTTGGAGTTTAGGAAGAGAGGAATCTTGCCTGATATTACTACTATGAATGCAATGCTTTCCATTTATGGGAGGAAGAATAAGAAGGGATCCAAAGCCAATGAGATTTTAAACTACATGTATGAGAGTGGATTGACTCTAAGTTTGACTACATATAACAGCTTGATGTATCGGTACAGCCGCACGAAAAATTTCCAAAAATCAGAGCAAATCTTGAGGGAGATTCTGGATAAAGGTATTGAACCCGATGTTGTCTCATACAACGTAGTTATTTATGCATATTGCAGAAACCGCATGATGGAGGAGGCAAAAAGGATATTTGAAGAAATGAAAGATCCTGCTCCTGCTCCGGATGTTGTAACTTACAACACATTTATAGCAACTTACGCAGCTGACTCAATGTTTGTGGAGGCTATTGATGTAGTACGGCATATGATCAAGCAAGGATGTAGGCCAAACCAAAATACTTACAATTCCATAGTTGATTGGTACTGTAAGTTGAAGTTGCGAGATGAGGCATGCAATTTTGTTCAAGACCTTGGCAACCTTGATCCACATATTGCTGAGGAGGAAAAAAGCAGGTTACTTGAGCGCATAGCAAAGAAATGGTCACAAGTTAAACCATGA 2367 0.4377 MAQNVSVPLILPNPPTASPSNTTFPKTLTLTPLLQDLFFNKKPSSSPRLHVSTSTHPTPRLSPQAHRILQTLIHPSFDSNSFHQILPPLFHQPASSSLSSDILGIIKALGFNNKFDLALSVFDFIRTRNDLVSLLNGSVIAVIVTLLGKTGRASHAASLLHDLETDGVEVDVYGYTSLITAYANNRKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKMGVPWTKIIALVQDMKCRGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFTPDVVTYNVLLDVYGKSRRPKEAIEVLKQMELDGFLPSVVTYNSLVSAYVRGGLLEDALELKWKMVEKGIKPDVYTYTTLLSGFVKAGKDDLAMDVFGEMRDVGCKPNICTFNALIKMYGDRGKFEEMERVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRAGFVPERDTFNTLISAYGRCGSFDQAMSVYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEATYSSLLHAYANGREVERMNALAEEIYSDRIKTHTVLLNTLVLVNSKVDLVEQTERAFLEFRKRGILPDITTMNAMLSIYGRKNKKGSKANEILNYMYESGLTLSLTTYNSLMYRYSRTKNFQKSEQILREILDKGIEPDVVSYNVVIYAYCRNRMMEEAKRIFEEMKDPAPAPDVVTYNTFIATYAADSMFVEAIDVVRHMIKQGCRPNQNTYNSIVDWYCKLKLRDEACNFVQDLGNLDPHIAEEEKSRLLERIAKKWSQVKP 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03374 788 Gene3D Tetratricopeptide repeat domain 335 412 IPR011990 GO:0005515
Vimu3g03374 788 Gene3D Tetratricopeptide repeat domain 693 764 IPR011990 GO:0005515
Vimu3g03374 788 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Vimu3g03374 788 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 698 732 IPR002885 -
Vimu3g03374 788 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Vimu3g03374 788 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Vimu3g03374 788 MobiDBLite consensus disorder prediction 1 24 - -
Vimu3g03374 788 Gene3D Tetratricopeptide repeat domain 224 323 IPR011990 GO:0005515
Vimu3g03374 788 Gene3D Tetratricopeptide repeat domain 61 223 IPR011990 GO:0005515
Vimu3g03374 788 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 592 627 IPR002885 -
Vimu3g03374 788 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Vimu3g03374 788 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Vimu3g03374 788 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 663 697 IPR002885 -
Vimu3g03374 788 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 105 392 - -
Vimu3g03374 788 Pfam PPR repeat 658 691 IPR002885 -
Vimu3g03374 788 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 241 IPR002885 -
Vimu3g03374 788 Gene3D Tetratricopeptide repeat domain 413 569 IPR011990 GO:0005515
Vimu3g03374 788 Gene3D Tetratricopeptide repeat domain 570 692 IPR011990 GO:0005515
Vimu3g03374 788 Pfam PPR repeat 419 449 IPR002885 -
Vimu3g03374 788 Pfam PPR repeat 455 484 IPR002885 -
Vimu3g03374 788 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Vimu3g03374 788 FunFam Pentatricopeptide repeat-containing protein At1g74850, chloroplastic 222 324 - -
Vimu3g03374 788 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Vimu3g03374 788 Pfam Pentatricopeptide repeat domain 158 220 IPR002885 -
Vimu3g03374 788 Pfam Pentatricopeptide repeat domain 335 396 IPR002885 -
Vimu3g03374 788 Pfam Pentatricopeptide repeat domain 265 324 IPR002885 -
Vimu3g03374 788 Pfam PPR repeat family 591 636 IPR002885 -
Vimu3g03374 788 Pfam PPR repeat family 697 746 IPR002885 -
Vimu3g03374 788 Pfam PPR repeat family 486 535 IPR002885 -
Vimu3g03374 788 SUPERFAMILY TPR-like 278 728 IPR011990 GO:0005515
Vimu3g03374 788 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 628 662 IPR002885 -
Vimu3g03374 788 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 452 486 IPR002885 -
Vimu3g03374 788 NCBIfam pentatricopeptide repeat 175 206 IPR002885 -
Vimu3g03374 788 NCBIfam pentatricopeptide repeat 279 312 IPR002885 -
Vimu3g03374 788 NCBIfam pentatricopeptide repeat 455 487 IPR002885 -
Vimu3g03374 788 NCBIfam pentatricopeptide repeat 244 278 IPR002885 -
Vimu3g03374 788 NCBIfam pentatricopeptide repeat 631 664 IPR002885 -
Vimu3g03374 788 NCBIfam pentatricopeptide repeat 349 383 IPR002885 -
Vimu3g03374 788 NCBIfam pentatricopeptide repeat 700 733 IPR002885 -
Vimu3g03374 788 NCBIfam pentatricopeptide repeat 208 242 IPR002885 -
Vimu3g03374 788 NCBIfam pentatricopeptide repeat 490 523 IPR002885 -
Vimu3g03374 788 NCBIfam pentatricopeptide repeat 419 451 IPR002885 -
Vimu3g03374 788 NCBIfam pentatricopeptide repeat 384 418 IPR002885 -
Vimu3g03374 788 NCBIfam pentatricopeptide repeat 314 348 IPR002885 -
Vimu3g03374 788 NCBIfam pentatricopeptide repeat 665 691 IPR002885 -
Vimu3g03374 788 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03374 Vimu-Chr3 47037816 47041297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03374 257 760 Glycosyltransferase AT1G05670 24.752 1.93e-49 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03374 - - gmx:100813079 1327.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03374 3 47037816 47041297 Vimu3g03374 3 47037816 47041297 ECH