Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03355 ATGTCGTTGCCTCAGCTGAGAGGAAGCAGATCTTATACTGTTGTCAAGATGAAGTTCATGAAGCTTGGATCCAAACCTGATACCTTTCAGACTGATGGGAACAATGTTAGGTATGTGGCAAGTGAGTTGGCGTCAGATATTGTTGTTAGTGTAGGAGACATCAAGTTTTATTTGCATAAGTTTCCTCTCCTTTCAAAGAGTTCACACTTACAGACATTGATCTCCCTCAACAATGAAGAAAATTTAGATGAAGTTCAGATTCCTGACATTCCCGGTGGTGCAACTACCTTTGAAATATGTGCTAAGTTTTGCTATGGTATGACCGTTACCCTCAATGCTTACAATGTAATAGCAACTCGGTGTGCAGCAGAGTATCTTGGAATGCATGAGACCATTGAGAAAGGAAACCTCGTTTACAAGATTGATGTTTTCCTTAGCTCTAGCATCTTCCGCAGTTGGAAGGATTCAATCATCCTTCTTCAGACTTCAAAGTCTATGTTACCCTTGGTTGAGGACCTAAAGGTAGTCAGTCATTGCGTTGATTCCATTGCAAATAAGGCATGTGTTGATGTATCCAAAGTTGACTGGTCCTACACCTATAACCGGAGGAAGCTTCCAGAGGAAAATGGGATCGAGTCAAACCAGAATGGACTCAGAACAAGACTGGTGCCAAAAGACTGGTGGGTAGAAGATTTATGCGAGCTTGAAGTTGATCTATACAAGTCTGTGATTTCAAATATTAAATCCAAGGCAGTTCAATCCAATGAAGTAATTGGTGAAGCTTTGAAAGCATATGCTTACAGAAGATTGCCAAATTTCAGCAAGGGTATGATCCAGTGTGGGGATGTGTCAAAGCATCGTGTAATAGTTGAAACTATTGTGTGGTTGTTGCCTACTGAGAAAGGCAGTGTTCCCTGTAGATTCTTACTCAAGTTGTTGAAAGCTGCCATTTTTGTAGAATCAGGAGATAGAACTAAAGAAGAGCTGGTAAAGAGAATTGGGCAGCAGCTGGAGGAGGCTTCTGTAAGTGATATTTTAATTCAAGCACCAGATGGGGATGCTACAATGTATGATGTTAGTATAGTACAAAACATTGTTACAGAGTTTTTTACGAAAGATTACAATGTTGAGATTGAATCAGTTGCGGGTGGTGAACTTGAGGGAATAAGAAAACCGGGGATTTTATCAGATGCTTCCAAGCTGATGGTTGCAAAACTGATAGATGGATACCTTGCTGAAATTGCAAAAGATCCCAATTTACCTTTGTCTGATTTTGTTAATCTTGCTGAGTTAGTGTCTAGCATCTCTCGTCCAGCTCATGATGGCCTTTACAGGGCTATTGATACATATCTGAAGGAGCATCCTGGGATCAGCAAAGGCGAAAAGAAGAGGATATGCAAGCTGATGGATTGTAGAAAGCTATCAGTTGACGCATGCTTGCATGCAGTGCAAAACGAGAGACTACCATTGCGTGTAGTTGTGCAGGTACTATATTTTGAGCAGTTAAGAACTGCTGCATCATCCGGCACTAGCACTCCTGACATACCTAGAGGAATCAAAGACTTGAACAATGAATCCAATGGAAGCTCAAGATCAGGGACAACTAACCCAGAAGATGAGTTGGATGCTGTGGCCACAGCTGAGGAACTGAAAGCATTAAGAAAGGAACTTGCATCATTGAGGCTGAGCAATGGAGTTGGAAACAATGACAAAGATGGAGATATCAAACCCAGCATGGACAAAGCTGTCATTGGCAAGGTGAAAGGGTTGCTCAAGTCAAAAAGGTCTTTCATAAAGCTTTGGGCTAGCAAAGGGGGTCAAGGAGAAAATAGTGGCTCAGACTCGTCAGAGAGTATTAGTTCTGCTAACCCAGAAGAAGCAAAATCTACTCCTTCCAGAAATAGGAGACATTCAGTTTCCTGA 1923 0.416 MSLPQLRGSRSYTVVKMKFMKLGSKPDTFQTDGNNVRYVASELASDIVVSVGDIKFYLHKFPLLSKSSHLQTLISLNNEENLDEVQIPDIPGGATTFEICAKFCYGMTVTLNAYNVIATRCAAEYLGMHETIEKGNLVYKIDVFLSSSIFRSWKDSIILLQTSKSMLPLVEDLKVVSHCVDSIANKACVDVSKVDWSYTYNRRKLPEENGIESNQNGLRTRLVPKDWWVEDLCELEVDLYKSVISNIKSKAVQSNEVIGEALKAYAYRRLPNFSKGMIQCGDVSKHRVIVETIVWLLPTEKGSVPCRFLLKLLKAAIFVESGDRTKEELVKRIGQQLEEASVSDILIQAPDGDATMYDVSIVQNIVTEFFTKDYNVEIESVAGGELEGIRKPGILSDASKLMVAKLIDGYLAEIAKDPNLPLSDFVNLAELVSSISRPAHDGLYRAIDTYLKEHPGISKGEKKRICKLMDCRKLSVDACLHAVQNERLPLRVVVQVLYFEQLRTAASSGTSTPDIPRGIKDLNNESNGSSRSGTTNPEDELDAVATAEELKALRKELASLRLSNGVGNNDKDGDIKPSMDKAVIGKVKGLLKSKRSFIKLWASKGGQGENSGSDSSESISSANPEEAKSTPSRNRRHSVS 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03355 640 Gene3D Potassium Channel Kv1.1; Chain A 19 137 IPR011333 -
Vimu3g03355 640 MobiDBLite consensus disorder prediction 507 540 - -
Vimu3g03355 640 ProSiteProfiles BTB domain profile. 45 113 IPR000210 GO:0005515
Vimu3g03355 640 ProSiteProfiles NPH3 domain profile. 226 503 IPR027356 -
Vimu3g03355 640 CDD BTB_POZ_NPY3-like 36 140 - -
Vimu3g03355 640 MobiDBLite consensus disorder prediction 602 640 - -
Vimu3g03355 640 SUPERFAMILY POZ domain 37 133 IPR011333 -
Vimu3g03355 640 PANTHER OS12G0117600 PROTEIN 39 616 IPR043454 -
Vimu3g03355 640 Pfam NPH3 family 226 479 IPR027356 -
Vimu3g03355 640 Pfam BTB/POZ domain 42 133 IPR000210 GO:0005515
Vimu3g03355 640 MobiDBLite consensus disorder prediction 522 539 - -
Vimu3g03355 640 Coils Coil 543 563 - -
Vimu3g03355 640 MobiDBLite consensus disorder prediction 606 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03355 Vimu-Chr3 46938043 46942689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03355 24 509 EF-hand Containing Proteins AT3G44820 35.893 2.42e-100 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03355 - - gmx:100807318 1148.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03355 3 46938043 46942689 Vimu3g03355 3 46938043 46942689 ECH