Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03353 ATGTCCTCTTCTCTCTCTCCACCGCTTCCTGGGTCGTTCATCCACGATTCTTCCTTCCTCCGTGGAACAAAGCTTTTTTCCCTTTCTCGAAGAGTGGCACCACGCGGCTTCAGCTCTTTCTCTGCTAAGTGCTCCCTCGACCACGTTCCCAAACAGTTCAGAAAGGAAAATCTCGCAGATGGATTGACGCAAAACTACAAGAACGTACCTCAATATCTATATGGCCTTACACCTTCCCAAATGGACATGTTCACGACAGGAGATGCTATCAGCCGGCAAACTGAAAGAGTTACAGAGGAAAGCATCTCATCTGCCAAGAATTATATAGATAATGGTGGAACGTGGAGTGTATCTGGCATGGGCAAAAATGATGCTTCAAAATACAGCATGAGTGTTAGAATGTATCAAGGAGGTTGGGGAAGTGAAAGGCCACAAACTGCTCCACCAGATCTGCCTTCTCTGCTTTTGGATGCTCGAATATGCTATCTGGGCATGCCGATTGTTCCAGCTGTGACAGAACTTATTGTTGCTCAATTCATGTGGTTGGATTTTGATAACCCAACCAAACCTATTTACTTTTACATTAATTCATCTGGAACTCAGAATGAGAAGCATGAGACAGTGGGATCAGAAACTGACGCATATTCCATAGCTGATATGATGTCTTATGTCAAAGCAGATGTGTATACTGTGAATTGTGGTATGGCATTTGGTCAGGCAGCAATGCTTCTGTCGCTTGGAACAAACGGTTATCGTGCGGTACAACCAAACTCATCTACAAAATTATATCTCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATCAAGGCAAAGGAGCTTGAGGCAAATTCGGACTATTACATTGATCTGTTGGTAAAAGGGACAGGGAAATCAAAGGAAGAAATTACTAAAGATGTCCAGAGGCCTAAGTATCTTCAAGCACAGCAAGCTATAGACTACGGACTTGCTGACAAAATCATTCAGTCAAGTTCGACGGATTCTGCATTTGAGAAGCGGAACTATGATGAAATGCTTGCTCAATCAAGTATGAGGAATCAAGGTGGTGTCGATCCTCAAGCGTCTCCTTCGGGATTCAGGTAA 1113 0.4358 MSSSLSPPLPGSFIHDSSFLRGTKLFSLSRRVAPRGFSSFSAKCSLDHVPKQFRKENLADGLTQNYKNVPQYLYGLTPSQMDMFTTGDAISRQTERVTEESISSAKNYIDNGGTWSVSGMGKNDASKYSMSVRMYQGGWGSERPQTAPPDLPSLLLDARICYLGMPIVPAVTELIVAQFMWLDFDNPTKPIYFYINSSGTQNEKHETVGSETDAYSIADMMSYVKADVYTVNCGMAFGQAAMLLSLGTNGYRAVQPNSSTKLYLPKVNRSSGAVIDMWIKAKELEANSDYYIDLLVKGTGKSKEEITKDVQRPKYLQAQQAIDYGLADKIIQSSSTDSAFEKRNYDEMLAQSSMRNQGGVDPQASPSGFR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03353 370 Gene3D - 126 338 - -
Vimu3g03353 370 Pfam Clp protease 152 333 IPR023562 -
Vimu3g03353 370 PRINTS Clp protease catalytic subunit P signature 150 165 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vimu3g03353 370 PRINTS Clp protease catalytic subunit P signature 309 328 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vimu3g03353 370 PRINTS Clp protease catalytic subunit P signature 190 210 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vimu3g03353 370 PRINTS Clp protease catalytic subunit P signature 230 247 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vimu3g03353 370 MobiDBLite consensus disorder prediction 349 370 - -
Vimu3g03353 370 SUPERFAMILY ClpP/crotonase 145 334 IPR029045 -
Vimu3g03353 370 CDD S14_ClpP_2 150 330 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vimu3g03353 370 FunFam ATP-dependent Clp protease proteolytic subunit 125 335 - -
Vimu3g03353 370 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 41 334 IPR023562 -
Vimu3g03353 370 MobiDBLite consensus disorder prediction 347 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03353 Vimu-Chr3 46912134 46916595 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03353 K01358 - gmx:100820008 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03353 3 46912134 46916595 Vimu3g03353 3 46912134 46916595 ECH