Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03342 ATGATTCACGGGACATCATTGGAGTCCATAATTCGAATTATTCATGTTTCTATCTGTCCCTTCATTCCCTCTCTGTCAATTCCAGACACTTATTCATTCTCTGATACCATTTCTAATATATATTCTCAACATGTGCAGCGCTTGGCGTCCATTCTTTGTCTTATGATTATTCTGCTAGCACAAAGCTTAAACCAGACTAGATATAGTCATGTGTGTTTAGTAGAACCTGAGAGAGCACAGTATGGAGGAGGCATTATAGTAAATCCAGAATTTGATCACAACATAGATAGTTGGAGAGTGTTTGGAAAAGGGTCAATCAAGGAACAAATATCGAATGAAGGCAATAGATTCATTGTTTCTCACAACAGAACACAGCCGTTGGATAGTTTCTCTCAGAAGGTCCAACTTCAGAAAGGAATGCTATACACCTTTTCTGCTTGGTTTCAGGTGAGTGAAGGAAGTGACACGGTGTCAGTGATGTTCAGAACAAAAGAAAGTGAACTGGTACGAGGTGGCCAGGTGATAGCAAAACATGGATGCTGGACCCTTCTAAAAGGTGGCATAGCTGCAAACTTTTCAAGCCCTGTTGATATTCTTTTTGAGAGCAAAAATTCAACTGTGGAAATATGGGCTGACAATGTCTCGTTACAACCGTTCACGAAAAAGCAGTGGAGATCACTACAAGACGCCAGCATTGAGAGGGTACGTAAGAGGAGAGTGAGATTCCAAATAACCCGTGTAAATGAAACAGCATTGAAAGGAGCTACAGTCATCGCCAGACCAGTAAAGTTGAACTTTCCATTTGGATGTGGAATGAACCATTACATCCTCACAAACAAAGACTACCAGAGTTGGTTTCTGTCAAGGTTCAAATTCGCAACCTTCACTAATGAGATGAAGTGGTACAGTACAGAGAAAGAGCAAGGCGTGGAAAACTATACTGTCGCAGATGCCATGCTAAAATTTACCAAAGAGAATGGCATTTCTGTGAGAGGCCATAACATTTTCTGGGACGATCCAAAATATCAGCTTGAATGGGTCAAGACCCTATCACCTGCGGATTTGAAAAAAGCAGCAGCAAAAAGAATGGAATCTGTGGTTTCAAGATACAAAGGACAACTGATTGCATGGGATGTGATGAATGAGAATCTCCACTTCCACTTCTTTGAGGACAAACTCGGCCAAAACGCCTCTGCAGAAGCATATGCAACAGCTTACGAGCTTGATTCAACGCCAAAAATGTTCCTGAATGAGTATAACACCATTGAATATAGTGGGGATGAGGCCTCCAGCCCTGTCAACTATATGAAGAAAATTAAGGAGATTCTGTCATTTCCAGGAGTTGCTGGAATGTCAGCAGCAATAGGGTTGCAAGGCCATTTTGCAAGTGGCCAGCCAAACCTTGCTTACATGAGGTCATCTCTTGATCTTCTTGCTACAACTGGACTTCCAATGTGGCTCACAGAAGTCAGTGTGGATCCACAACCAAGTCAGGCAGAGTATTTGGAAGAGGTGCTGAGAGAGGCGTACTCTCATCCTGGAGTTGATGGGATTATAATGTTTTCTGGTCCAGCACAAGCTGGTTTCAATACCACCACTCTGGCGGATGAGAATTTCAAAAATACTCCTGCTGGAGACGTTGTGGACAAGCTCATTCGGGAGTGGGGGACTGGGCCTAATATTGCCACAGCAGATGGCAGAGGAATGGTAGATATTTCACTGCACCATGGAGATTATGATGTAACTGTCACACATCCTCGAATCCACTCCCCTAGAAAGTTGAATCTGAGTGTAATGAGAGATTTATCCCTTGAAACCATTCATGTGAAAATGTACTAA 1839 0.4258 MIHGTSLESIIRIIHVSICPFIPSLSIPDTYSFSDTISNIYSQHVQRLASILCLMIILLAQSLNQTRYSHVCLVEPERAQYGGGIIVNPEFDHNIDSWRVFGKGSIKEQISNEGNRFIVSHNRTQPLDSFSQKVQLQKGMLYTFSAWFQVSEGSDTVSVMFRTKESELVRGGQVIAKHGCWTLLKGGIAANFSSPVDILFESKNSTVEIWADNVSLQPFTKKQWRSLQDASIERVRKRRVRFQITRVNETALKGATVIARPVKLNFPFGCGMNHYILTNKDYQSWFLSRFKFATFTNEMKWYSTEKEQGVENYTVADAMLKFTKENGISVRGHNIFWDDPKYQLEWVKTLSPADLKKAAAKRMESVVSRYKGQLIAWDVMNENLHFHFFEDKLGQNASAEAYATAYELDSTPKMFLNEYNTIEYSGDEASSPVNYMKKIKEILSFPGVAGMSAAIGLQGHFASGQPNLAYMRSSLDLLATTGLPMWLTEVSVDPQPSQAEYLEEVLREAYSHPGVDGIIMFSGPAQAGFNTTTLADENFKNTPAGDVVDKLIREWGTGPNIATADGRGMVDISLHHGDYDVTVTHPRIHSPRKLNLSVMRDLSLETIHVKMY 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03342 612 Pfam Glycosyl hydrolase family 10 263 502 IPR001000 GO:0004553|GO:0005975
Vimu3g03342 612 PANTHER GLYCOSYL HYDROLASE 64 591 IPR044846 GO:0004553|GO:0005975
Vimu3g03342 612 SMART glyco_10 299 551 IPR001000 GO:0004553|GO:0005975
Vimu3g03342 612 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 258 551 IPR001000 GO:0004553|GO:0005975
Vimu3g03342 612 SUPERFAMILY Galactose-binding domain-like 82 218 IPR008979 -
Vimu3g03342 612 Gene3D Glycosidases 257 558 - -
Vimu3g03342 612 Pfam Carbohydrate binding domain 84 185 IPR003305 GO:0016798
Vimu3g03342 612 SUPERFAMILY (Trans)glycosidases 253 558 IPR017853 -
Vimu3g03342 612 Gene3D - 74 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03342 Vimu-Chr3 46855106 46859952 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03342 72 601 Glycoside Hydrolase AT4G33840 48.218 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03342 - - gmx:100777980 977.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03342 3 46855106 46859952 Vimu3g03342 3 46855106 46859952 ECH