Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03335 ATGGAAGAAGAAGACATGGATGAAATTCTCGGTGTTGCTTACTGCGTTGCAAGATTTCCCTCCTGGCCTGAAGGGATTTTTCTTGGGTTTCTGCATTGCGTGGTTGAGGTTGGGACCATTGCCATGGCTTCCCGCATCCTTGTCCCTTTGATGGGTGGTGGCAATGAGGAGAAGGCTGAAATGATAGAGACTATACTTTTCGTTGCGGCGATTAACACAGTGCTGCAAACGTGGTTTGGAACACGTCTTCCTGTTGTCATGGGACCATCGTACACTTTCCTAGTTCCTGCTGTGTCCATTGCTTTTTCCAAGAGGATGAGTGTGTTTGAAGATCCGCATCAGAAGTATAGGAATAGGAAAAGTTCTGGAGATAAAAGTTTAGTGCGTCTCACTGATTTGAAAATTTTCTTGGTTTTAGAGGTTTACACATTCGATGAGAGCCATTCAAGGGGCACTTATTGTTGCATCGTGTTTTCAAATGTGTGTTGGGTTTTTAGGATTTTGGAGGATTTTCGCCAGATACTACATTGTCCTGAGATTGCTCTGCCAACATTATTCATTCTCGTCTTGTTCCAGACTTCATTCCATTTGTGCAGGATAAGAGTTCCACGTCCGTTTAAATGGGGACGCCCTTCTTTTAATGCTGGTGATATTTTTGCTATGGTTTCTGCTTCTCTTGTTGCAACTATAGAGTCAACAGGGACATTCATTGCAGCATCAAGATTAGGTAAAGCAACCCCTATTCCACCATCTGTGCTTGGTCGTGGTGTTGGCTGGCTGGGCATAGGTACTCTCTTGGATGGATTTTTTGGCACTGGAACTGGATCCACTGCATCAGTTGTCTTCTACTTAACCATTCGGGATTGTGCTATTGTGTCAGGAAAATTTGGAGCATTTCTTGCATCAGTGCCTTTCCCTATTGTAGCAGCTATTTACTGCATTCTCTTTGCCTTCGTAGCAGCATCCGCTGGCCTTGGTTTTCTTCAATTCTGCAATCTTAACAGTTATAGGTCAATGTTCATCCTTGGACTTTCTCTCTGCATCGGTTTATCTGTTCCACAGTATTTCAACGAGTATCTGTTGCTACCCAAACATGGTCGTCTCCATACAGGCTCCACTGGGTTCAACAACACAGTGCAAGTGCTTCTCTCATCCCCAGCAACTGTGGCAATAATAGTTGCTTACTTCTTGGATTTAATTCTGCGTCGTGGAGACGCCTCAGCCCGGCGAGACAGTGGAAGACACTGGTGGGAAAAATTCAGGAGCTTCAACCAGGATACTAGAAGTGAAGAGCACCCCTGCTTGGGCTGTGAGGGTGTGAATGTAGTGTCTTGTGGGATTGAAGCTTGA 1350 0.4496 MEEEDMDEILGVAYCVARFPSWPEGIFLGFLHCVVEVGTIAMASRILVPLMGGGNEEKAEMIETILFVAAINTVLQTWFGTRLPVVMGPSYTFLVPAVSIAFSKRMSVFEDPHQKYRNRKSSGDKSLVRLTDLKIFLVLEVYTFDESHSRGTYCCIVFSNVCWVFRILEDFRQILHCPEIALPTLFILVLFQTSFHLCRIRVPRPFKWGRPSFNAGDIFAMVSASLVATIESTGTFIAASRLGKATPIPPSVLGRGVGWLGIGTLLDGFFGTGTGSTASVVFYLTIRDCAIVSGKFGAFLASVPFPIVAAIYCILFAFVAASAGLGFLQFCNLNSYRSMFILGLSLCIGLSVPQYFNEYLLLPKHGRLHTGSTGFNNTVQVLLSSPATVAIIVAYFLDLILRRGDASARRDSGRHWWEKFRSFNQDTRSEEHPCLGCEGVNVVSCGIEA 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03335 449 PANTHER XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER 292 437 - -
Vimu3g03335 449 Pfam Permease family 42 101 IPR006043 GO:0016020|GO:0022857|GO:0055085
Vimu3g03335 449 Pfam Permease family 196 356 IPR006043 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03335 Vimu-Chr3 46775254 46780166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03335 7 431 Organic Solute Cotransporters AT1G60030 39.759 1.66e-114 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03335 - K23717 gmx:100820533 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03335 3 46775254 46780166 Vimu3g03335 3 46775254 46780166 ECH