Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03331 ATGTTGCAAACCCTAGGAGGCGTAACCCCTCGCTTCGTGAATCGGTCATGGCTCCGAAACCTGACGGTGCGTGCAATGACATTCTCTTCCTCATCCGATTATGGAGACCAGTCACGTGGTGGCCTTCCTCGTTTCTACTCCGAAATTCTTCCTCCTTCCAAGGGTAGTGTTATACGCGTGCAAGGTGATGAATTTTGGCATATGACAAAAGTACTGAGGTTAAGCACCAACGATAGGGTACAGCTGTTCAATGGAAAAGGAGGTCTTGTAGAAGGATGCATACAGGACATTGATCGCAGTGGGCTTGATTTTGTTGCATCGAGTACGCTAAAGGGTGGTCGTGCAGACTGGCTTGTAGAAAAGTGCACAGAACTTGGAGCCAGTAGTGTAACTCCTCTGTTGACTGAACGTTCTCCATCGATCTCAGAAAATCGGGTGGACAGATTGGAACGTGTCATTTTAGCAGCATCCAAACAATGTCAACGACTGCATGAAATGGTTCTGAAAGATCCTATAGAGATTAATGACCTTGTGCACCTTATTGCACAATCAAAGCTAGCTCTTGTTGCGACGGGGAAGGCAACTCCTGTTCTTAGTGCATTGACGTCATTGGAAAAGGAAACCAGTGGCTTAATAATTATTGGACCAGAAGGCGATTTCACCGAGAAAGAAACAAGTATGATGATGGGAGCAGGTGCTACAGCTGTTAGTCTTGGACCTCATCGTCTTCGGGTTGAAACTGCCACGATATCACTTTTGGCAACTGTGATGTTATGGTCTGACTCGCTGCAAACTTCGGTCAGTTGA 807 0.4647 MLQTLGGVTPRFVNRSWLRNLTVRAMTFSSSSDYGDQSRGGLPRFYSEILPPSKGSVIRVQGDEFWHMTKVLRLSTNDRVQLFNGKGGLVEGCIQDIDRSGLDFVASSTLKGGRADWLVEKCTELGASSVTPLLTERSPSISENRVDRLERVILAASKQCQRLHEMVLKDPIEINDLVHLIAQSKLALVATGKATPVLSALTSLEKETSGLIIIGPEGDFTEKETSMMMGAGATAVSLGPHRLRVETATISLLATVMLWSDSLQTSVS 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03331 268 SUPERFAMILY alpha/beta knot 105 260 IPR029028 -
Vimu3g03331 268 Gene3D - 41 106 - -
Vimu3g03331 268 CDD RsmE-like 110 254 IPR046886 -
Vimu3g03331 268 Gene3D - 107 266 IPR029026 -
Vimu3g03331 268 NCBIfam RsmE family RNA methyltransferase 105 257 IPR006700 GO:0006364|GO:0008168
Vimu3g03331 268 Pfam RNA methyltransferase PUA domain 61 104 IPR046887 -
Vimu3g03331 268 Pfam RNA methyltransferase domain 105 256 IPR046886 -
Vimu3g03331 268 SUPERFAMILY PUA domain-like 43 103 IPR015947 -
Vimu3g03331 268 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 41 106 IPR006700 GO:0006364|GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03331 K09761 - gmx:100777253 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03331 3 46745025 46748651 Vimu3g03331 3 46745025 46748651 ECH