Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03326 ATGCAGCCCGATGGTCAAATGCCAAGTGACAAAACAGTTGGTGGTGGTGACGATGCTTTCAACACTTTCTTCAGCGAGACAGGTGCTGGAAAGCATGTTCCACGTGCCGTCTTTGTGGATCTTGAGCCCACTGTGATTGATGAGGTTAGGACTGGACCTTACCGCCAGCTTTTCCACCCAGAGCAGCTCATCAGCGGCAAAGAAGATGCCGCCAACAACTTTGCCCGTGGCCATTATACCATTGGGAAAGAGATCGTTGATCTGTGTTTGGACCGCATCCGAAAGCTTGCTGACAACTGCACTGGTCTCCAGGGGTTCCTGGTTTTCAATGCTGTTGGTGGAGGAACTGGTTCTGGTCTTGGCTCTCTTCTGTTGGAGCGTCTCTCTGTTGATTATGGCAAGAAATCCAAACTTGGTTTCACTGTCTACCCCTCTCCCCAGGTCTCCACCTCTGTTGTTGAGCCATACAACAGTGTCCTCTCCACACACTCTCTCTTGGAGCACACTGATGTAGCAGTGCTTTTGGACAATGAGGCCATTTATGACATCTGCAGGCGCTCCCTTGACATCGAGCGGCCCACATACACTAATCTCAACCGTCTTGTTTCGCAGGTGATTTCTTCTCTGACTGCTTCCCTGAGGTTTGATGGTGCCCTGAATGTGGATGTGACTGAATTCCAGACCAACTTGGTCCCATATCCCAGAATCCACTTCATGCTTTCCTCCTATGCCCCAGTTATCTCTGCCGAGAAGGCTTACCATGAACAGCTTTCAGTGGCTGAAATTACCAACAGTGCTTTTGAGCCATCTTCCATGATGGCTAAGTGTGATCCTCGCCATGGAAAATATATGGCCTGTTGCCTGATGTACCGTGGTGATGTTGTGCCTAAAGATGTGAACGCAGCTGTTGCTACCATCAAGACGAAGAGGACCATTCAATTTGTGGATTGGTGTCCTACTGGTTTTAAGTGTGGTATCAACTACCAGCCACCTACCGTTGTCCCTGGAGGTGACCTTGCCAAGGTGCAGAGAGCAGTATGCATGATTTCGAACTCCACCAGTGTGGCGGAGGTATTTGGCCGCATTGACCACAAGTTTGATCTCATGTATGCCAAACGTGCCTTTGTTCACTGGTACGTGGGTGAGGGTATGGAAGAAGGTGAGTTTTCAGAAGCTCGTGAGGACCTCGCTGCTCTTGAGAAGGATTACGAGGAAGTGGGTGCTGAGTCGGGTGAGGGCGTGGAGGAGGAAGAGGAGTACTAG 1263 0.5028 MQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGPYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFGRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESGEGVEEEEEY 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03326 420 PANTHER TUBULIN 4 410 IPR000217 GO:0005874|GO:0007017
Vimu3g03326 420 SUPERFAMILY Tubulin nucleotide-binding domain-like 2 215 IPR036525 -
Vimu3g03326 420 Pfam Tubulin C-terminal domain 234 363 IPR018316 -
Vimu3g03326 420 PRINTS Alpha-tubulin signature 292 313 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03326 420 PRINTS Alpha-tubulin signature 59 72 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03326 420 PRINTS Alpha-tubulin signature 245 260 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03326 420 PRINTS Alpha-tubulin signature 119 131 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03326 420 PRINTS Alpha-tubulin signature 16 29 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03326 420 PRINTS Alpha-tubulin signature 185 197 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03326 420 PRINTS Alpha-tubulin signature 393 409 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03326 420 PRINTS Alpha-tubulin signature 132 143 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03326 420 PRINTS Alpha-tubulin signature 91 99 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03326 420 PRINTS Alpha-tubulin signature 331 350 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03326 420 PRINTS Alpha-tubulin signature 318 331 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03326 420 PRINTS Alpha-tubulin signature 356 372 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03326 420 PRINTS Tubulin signature 124 145 IPR000217 GO:0005874|GO:0007017
Vimu3g03326 420 PRINTS Tubulin signature 163 183 IPR000217 GO:0005874|GO:0007017
Vimu3g03326 420 PRINTS Tubulin signature 105 123 IPR000217 GO:0005874|GO:0007017
Vimu3g03326 420 PRINTS Tubulin signature 351 379 IPR000217 GO:0005874|GO:0007017
Vimu3g03326 420 PRINTS Tubulin signature 66 77 IPR000217 GO:0005874|GO:0007017
Vimu3g03326 420 PRINTS Tubulin signature 24 43 IPR000217 GO:0005874|GO:0007017
Vimu3g03326 420 PRINTS Tubulin signature 149 162 IPR000217 GO:0005874|GO:0007017
Vimu3g03326 420 PRINTS Tubulin signature 79 103 IPR000217 GO:0005874|GO:0007017
Vimu3g03326 420 FunFam Tubulin alpha chain 240 354 - -
Vimu3g03326 420 FunFam Tubulin alpha chain 1 239 - -
Vimu3g03326 420 CDD alpha_tubulin 2 406 - -
Vimu3g03326 420 SMART Tubulin_C_4 219 364 IPR018316 -
Vimu3g03326 420 Gene3D Helix hairpin bin 355 407 IPR023123 -
Vimu3g03326 420 SUPERFAMILY Tubulin C-terminal domain-like 217 407 IPR008280 -
Vimu3g03326 420 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 113 119 IPR017975 GO:0005525|GO:0005874|GO:0007017
Vimu3g03326 420 Gene3D Tubulin/FtsZ, GTPase domain 1 239 IPR036525 -
Vimu3g03326 420 SMART Tubulin_4 20 217 IPR003008 GO:0005525
Vimu3g03326 420 Pfam Tubulin/FtsZ family, GTPase domain 11 184 IPR003008 GO:0005525
Vimu3g03326 420 Coils Coil 389 409 - -
Vimu3g03326 420 FunFam Tubulin alpha chain 355 420 - -
Vimu3g03326 420 Gene3D - 240 354 IPR037103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03326 Vimu-Chr3 46700937 46702370 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03326 K07374 - zju:107435591 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03326 3 46700937 46702370 Vimu3g03326 3 46700937 46702370 ECH
Vimu7g02694 7 22680519 22682433 Vimu3g03326 3 46700937 46702370 PCT