Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03313 ATGAAAAACTTCCACCTGACGCTTATCTTCTTCATCGGATTTGTTTCCTTCAGTCTGTTTCAAGACTCGGCTGCATCTGTTGTTTCAACAGGAGACTTCAACAAGGACTTCTTTGTGATATGGTCTCCCACCCATGTGAACACATCTGCGGATGGACAGACAAGGAGCTTGAAACTGGACCAAGAATCTGGAGCTGGTTTTGCTTCAAACCAGATGTTTTTATTTGGGCAAATAGACATGCAAATCAAACTAGTGCCAGGTGATTCTGCAGGCACTGTCCTGGCCTATTATCTTACCTCTGATCAACCTAATCGAGATGAGATAGACTTTGAGTTTCTTGGCAATGTCTCCGGGCAGCCATATATTCTTCAAACAAATATTTTCGCAGATGGAACAGACAATCGAGAGGAGAGAATTTTTCTGTGGTTTGATCCAACAAAGGACTTTCATACTTATTCAGTGTTGTGGAATATACACCAGATTGTGTTAATGGTGGATATGATTCCCGTAAGAGTTTACAGAAACCATGGAGAGAAGGGTGTAGCATTTCCTAGATGGCAGCCAATGAGTGTGAAAGCGAGTTTATGGAATGGTGATAGCTGGGCTACACGAGGTGGGCAAGATAAGATTGATTGGACAAAGGGTCCCTTCATAGCTTCATTCAGAAATTACAAGATTGATGGTTGTGTATGGAAAGGGAACCCAAGGTTTTGCAGAGCAGCTAGTCCTGCCAATTGGTGGAACCAATACAGCTCAAGCACACTCACATCTGCACAAAGAAGGTGGTTGAAATGGGTCAGGAAATACCACATGATTTATGATTACTGTCAAGACACTCAGAGGTTCCACAACAATCTTCCCAGGGAATGTTCTCTTCCCAAATATTGA 888 0.4268 MKNFHLTLIFFIGFVSFSLFQDSAASVVSTGDFNKDFFVIWSPTHVNTSADGQTRSLKLDQESGAGFASNQMFLFGQIDMQIKLVPGDSAGTVLAYYLTSDQPNRDEIDFEFLGNVSGQPYILQTNIFADGTDNREERIFLWFDPTKDFHTYSVLWNIHQIVLMVDMIPVRVYRNHGEKGVAFPRWQPMSVKASLWNGDSWATRGGQDKIDWTKGPFIASFRNYKIDGCVWKGNPRFCRAASPANWWNQYSSSTLTSAQRRWLKWVRKYHMIYDYCQDTQRFHNNLPRECSLPKY 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03313 295 Gene3D - 21 294 - -
Vimu3g03313 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 30 290 IPR044791 GO:0004553
Vimu3g03313 295 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 293 IPR013320 -
Vimu3g03313 295 CDD GH16_XET 29 290 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vimu3g03313 295 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 21 221 IPR000757 GO:0004553|GO:0005975
Vimu3g03313 295 ProSitePatterns Glycosyl hydrolases family 16 active sites. 107 117 IPR008263 GO:0004553|GO:0005975
Vimu3g03313 295 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 242 290 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Vimu3g03313 295 FunFam Xyloglucan endotransglucosylase/hydrolase 21 292 - -
Vimu3g03313 295 PIRSF EndGlu_transf 2 295 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vimu3g03313 295 Pfam Glycosyl hydrolases family 16 34 214 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03313 Vimu-Chr3 46618432 46619705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03313 57 295 Glycoside Hydrolase AT2G14620 72.385 5.61e-136 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03313 K08235 - gmx:100783152 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03313 3 46618432 46619705 Vimu3g03313 3 46618432 46619705 ECH