Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03127 ATGGCTTTCTCTTCTAAACTTGACAGCTTCATTCTCTCTGCCTACAAATCGAAAAACTCCACTGCCCCACTTTCAAAAATCCAACCTTCCTCATTTCTCCCACGTCCTTCTTCCTTGAAGCCTCAAAAGCTTCCCTTCAGAACTCGCTACGATTCAACCATCCGAGCCACCTCAGCACCCTCATCCCCTTCCACAGCCATTGCCGAACCTGAAGGCATTAAGATTAATTCGATTCCAACCAAACCCTTTGAGGGACAAAAGACTGGTACTAGTGGGCTTCGGAAGAAGGTGAAGGTCTTTACGCAAGAAAATTACCTTGCAAATTGGATCCAGGCCCTGTTTAACTCATTGCCTCCGGAGGATTACAAGAATGGTTTGTTAGTGTTGGGAGGTGATGGTCGATACTTTAATCGGGAAGCTGCCCAGATCATAATAAAAATTGCTGCTGGAAATGGTGTTGGAAAAATTCTGGTCGGAAAGGAAGGTATTTTGTCAACACCAGCTGTTTCTGCAGCAAATGGTGGATTTATTATGAGTGCAAGCCATAATCCCGGTGGGCCTGAATATGATTGGGGTATTAAGTTCAATTACAGCAGTGGACAACCTGCACCAGAATCCATCACTGACAAGATTTATGGAAACACTTTGTCGATCTCTGAGATAAAGATAGCTGACGTTCCTGATGTTGACTTATCGAAAGTTGGGGTTACAAAGTTTGGAAGCTTCAGCGTGGAAGTAATAGATCCAGTCTCTGACTATCTGGAGCTACTGGAGACAGTATTTGATTTTCAGCTAATCAAAGGACTTCTTTCACGTCCAGATTTTAGGTTTATATTTGATGCCATGCATGCAGTTACTGGTGCTTATGCTAAACCCATCTTCGTTGATAAACTTGGTGCAAGTCTGGATTCAATTTCTAATGGAATTCCTTTGGAAGATTTTGGACACGGCCATCCTGATCCTAATCTAACATATGCAAAGGATCTTGTAAACATTCTGTACGCTGAAAATGGACCTGATTTTGGAGCTGCCAGTGATGGGGATGGTGATAGAAATATGATTCTAGGAAGAAGTTTTTTTGTAACTCCTTCAGACTCCGTCGCAGTTATTGCAGCCAATACAGAAGCAATTCCATACTTCAAGAATGGCGTGAAGGGTCTTGCTCGATCAATGCCCACAAGTGGTGCTCTTGATCGTGTTGCTGAAAAACTGAGCCTCCCTTTCTTCGAGGCAAACGGACCCTGGATTCAGGTCCCCACTGGTTGGAAATTTTTTGGAAATCTTATGGATGCTGGGAATTTGTCAGTTTGCGGGGAAGAGAGTTTTGGAACAGGTTCTGACCACATTCGTGAGAAAGATGGCATCTGGGCTGTCTTAGCTTGGCTTTCTATTATTGCACATCGTAACAAAGACAAGAAGCCAGGGGAGAAATTGATCTCCGTATCTGACGTCGTGAAGGAGCACTGGGCAACTTATGGACGGAATTTCTTCTCTAGATATGACTACGAGGAATGTGAATCTGAAGGTGCCAATAAGATGATAGAATACCTACGAGATATTGTATCCAAGAGCAAGGCTGGTGATAAGTATGGAAGTTATGTCCTCCAGTTTGCAGATGATTTTACATACACCGATCCTGTAGATGGAAGTGTGGTATCAAAACAAGGCGTTCGGTTTGTTTTTACAGATGGCTCAAGGATTATATATCGTTTATCAGGAACTGGTTCTGCAGGGGCAACTGTTAGAGTGTACATCGAACAGTTTGAACCCGATGTTTCTAAACATGATGTTGAAGCTCAAATTGCCTTAAAACCATTAATAGATTTGGCAATATCCGTGTCAAAGCTCAAAGACTTCACAGGGAGGGAGCAACCTACTGTGATCACATAA 1890 0.4302 MAFSSKLDSFILSAYKSKNSTAPLSKIQPSSFLPRPSSLKPQKLPFRTRYDSTIRATSAPSSPSTAIAEPEGIKINSIPTKPFEGQKTGTSGLRKKVKVFTQENYLANWIQALFNSLPPEDYKNGLLVLGGDGRYFNREAAQIIIKIAAGNGVGKILVGKEGILSTPAVSAANGGFIMSASHNPGGPEYDWGIKFNYSSGQPAPESITDKIYGNTLSISEIKIADVPDVDLSKVGVTKFGSFSVEVIDPVSDYLELLETVFDFQLIKGLLSRPDFRFIFDAMHAVTGAYAKPIFVDKLGASLDSISNGIPLEDFGHGHPDPNLTYAKDLVNILYAENGPDFGAASDGDGDRNMILGRSFFVTPSDSVAVIAANTEAIPYFKNGVKGLARSMPTSGALDRVAEKLSLPFFEANGPWIQVPTGWKFFGNLMDAGNLSVCGEESFGTGSDHIREKDGIWAVLAWLSIIAHRNKDKKPGEKLISVSDVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLRDIVSKSKAGDKYGSYVLQFADDFTYTDPVDGSVVSKQGVRFVFTDGSRIIYRLSGTGSAGATVRVYIEQFEPDVSKHDVEAQIALKPLIDLAISVSKLKDFTGREQPTVIT 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03127 629 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 73 629 IPR045244 GO:0004614|GO:0005975
Vimu3g03127 629 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 552 604 IPR005843 GO:0016868|GO:0071704
Vimu3g03127 629 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 175 184 IPR016066 GO:0000287
Vimu3g03127 629 MobiDBLite consensus disorder prediction 21 42 - -
Vimu3g03127 629 MobiDBLite consensus disorder prediction 21 37 - -
Vimu3g03127 629 FunFam Phosphoglucomutase 5 475 629 - -
Vimu3g03127 629 Gene3D - 475 629 - -
Vimu3g03127 629 FunFam Phosphoglucomutase 5 74 256 - -
Vimu3g03127 629 SUPERFAMILY Phosphoglucomutase, first 3 domains 251 360 IPR016055 GO:0005975|GO:0016868
Vimu3g03127 629 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 86 219 IPR005844 GO:0005975|GO:0016868
Vimu3g03127 629 SUPERFAMILY Phosphoglucomutase, first 3 domains 75 281 IPR016055 GO:0005975|GO:0016868
Vimu3g03127 629 FunFam Phosphoglucomutase 5 257 359 - -
Vimu3g03127 629 CDD PGM1 78 629 - -
Vimu3g03127 629 Gene3D - 74 256 - -
Vimu3g03127 629 PRINTS Phosphoglucomutase/phosphomannomutase family signature 274 293 IPR005841 GO:0005975|GO:0016868
Vimu3g03127 629 PRINTS Phosphoglucomutase/phosphomannomutase family signature 174 188 IPR005841 GO:0005975|GO:0016868
Vimu3g03127 629 PRINTS Phosphoglucomutase/phosphomannomutase family signature 310 323 IPR005841 GO:0005975|GO:0016868
Vimu3g03127 629 PRINTS Phosphoglucomutase/phosphomannomutase family signature 339 354 IPR005841 GO:0005975|GO:0016868
Vimu3g03127 629 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 252 355 IPR005845 GO:0005975
Vimu3g03127 629 SUPERFAMILY Phosphoglucomutase, first 3 domains 347 499 IPR016055 GO:0005975|GO:0016868
Vimu3g03127 629 Gene3D - 360 464 - -
Vimu3g03127 629 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 363 492 IPR005846 GO:0005975|GO:0016868
Vimu3g03127 629 Gene3D - 257 359 - -
Vimu3g03127 629 SUPERFAMILY Phosphoglucomutase, C-terminal domain 494 629 IPR036900 GO:0016868|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03127 Vimu-Chr3 45033472 45043640 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03127 K01835 - gmx:100802730 1146.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03127 3 45033472 45043640 Vimu3g03127 3 45033472 45043640 ECH