Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03110 ATGCAGTCCCTTGGTCAAAACGAGGGCTCCCTATCATGCCCTCAAGGTTGTTGTCCTACTTTATTGTTCAATCCTCCACCACCTCAATCTCAGAACACAACAACCAAACCCAGAAACAGTTCTGCAGAGTGTCGCCACAGCTTTGTAGCCACCACGTCATCCTATATCTTCCCAAACACCAAATTCACCAACCATGAGTCCCTTCCTTCTCTTCATGAATCATTCGGTGAATTCAAGAAAGTGTATCCTCAATACTCCGAAACTGACCAAGTGGACCATTTAAGAGCTAAGGAATATTACCATCTCTCTTTCTCCAACCAGTCATGCCTTGACTACATTGGTATTGGCCTCTTCTCCTATTACCAACGCCAACATCACCATGACACCTCAAAAACTCAACTTGCCTCTTCTTCAACACCTCTATCCCCACCCCAATATTCTGATATTCCCTTCTTTAGCATATCCTACAAGACTGGGAATCTGAAAACACTTTTGCTTCATGGGGGGCAGGAGTCAGAGTTTGAGTCTGCCATGAAGAGAAGAATAATGAAGTTTCTCAACATTTCTGAAAATGACTACTTCATGGTTTTCACAGCAAACAGAACTTCAGCTTTCAAACTTGTGGCAGACTCGTATCCATTCCAATCTAGCAAGAAGCTTCTGACAGTTTATGACTATGAGAGTGAGGCAGTGGAAGCAATGATCTGTTGCTCGGAGAAGAGAGGAGCCAAGGCCATGTCAGCAGAGTTCTCATGGTCAAGGCTGAGGATTCAGTCAACAAAACTGAGGAAGATGATTGTTAGCAAGAAGAAGAAGAAAAAGAAGAGGGGTCTCTTCGTATTTCCACTTCACTCCAGGGTAACGGGAGCAAGATATCCTTACCTGTGGATGAGCATAGCACAGGAGAATGGATGGCATGTCTTGATTGATGCTTGTGCATTGGGTCCCAAAGACATGGATAGCTTTGGCCTATCTCTCTTTCAACCCGACTTTCTCATCTGCTCATTCTACAAGGTCTTCGGAGAAAATCCATCAGGGTTTGGATGCCTTTTTGTCAAGAAATCTGCTATTACCACTCTTGAATCCTCTTCTTGCGCGGGAATTGTGAACCTCGTACCAGATAGGTTTCTACGTCAGTCATCAGAAGATAAGTGTTCTTCTGGGAACTGTAAACAAAAACCATTATCTAGCTTGCAAGACCAAGAATTGTCTTCCTTAAATTCTTTCTCTGGTCGGATACAAACTTCGGAAGCTTTAAAAGTTGAAGAATCATGTGAGCTTCAGATCATGGTGGCAGCAGCAGAGCCAAAGAAAGGCTCTGGAAGTGTTGAAGCAAAAGAAGTGGTTGAGAGCCTTCAAAATAAGAAAGCACAACATGGTGAGAACGGTGGATTTAACATTGAGTGCAGATGTTTGGATCAAGTGGACTCTTTGGGATTGACAATGGTCACCAATAGAACAAGGTATCTGATAAATTGGCTGGTGAACTCCATGATGAAGCTGAAGCACCCTAATGCAGCAGGGGAACCACTAGTCAAGATTTATGGCCCAAAGGTAAAATTTGATCGAGGGCCTGCTTTGGCATTCAACGTGTTTGATTGGAAAGGCGAGAAGGTTGAGCCCGTCCTTGTACAGAAACTTGCTGATAGGAACAATATATCTCTCAGTTATGGGTTTCTGCATCATATTTGGTTTGCAGATAAGTATTCAGAAGACAAGGGAAAAGTTCTACAGACCAAAGAAGGAAGAGGCCAGGGACTAACCACCAACAAGAAGAAAGATAGGGATAAACTAGGAGTAACAGTAGTTACTGCTGCATTAAGTTTCCTGGCTAATTTTGAAGATGTATATAAACTATGGACTTTTGTTGCCAGGTTCCTTGATGCTGATTTTGTGGAGAAGGAGAGATGGAGATACACGGCTCTAAATCAGAAAACAATTGAAGTTTAA 1950 0.4287 MQSLGQNEGSLSCPQGCCPTLLFNPPPPQSQNTTTKPRNSSAECRHSFVATTSSYIFPNTKFTNHESLPSLHESFGEFKKVYPQYSETDQVDHLRAKEYYHLSFSNQSCLDYIGIGLFSYYQRQHHHDTSKTQLASSSTPLSPPQYSDIPFFSISYKTGNLKTLLLHGGQESEFESAMKRRIMKFLNISENDYFMVFTANRTSAFKLVADSYPFQSSKKLLTVYDYESEAVEAMICCSEKRGAKAMSAEFSWSRLRIQSTKLRKMIVSKKKKKKKRGLFVFPLHSRVTGARYPYLWMSIAQENGWHVLIDACALGPKDMDSFGLSLFQPDFLICSFYKVFGENPSGFGCLFVKKSAITTLESSSCAGIVNLVPDRFLRQSSEDKCSSGNCKQKPLSSLQDQELSSLNSFSGRIQTSEALKVEESCELQIMVAAAEPKKGSGSVEAKEVVESLQNKKAQHGENGGFNIECRCLDQVDSLGLTMVTNRTRYLINWLVNSMMKLKHPNAAGEPLVKIYGPKVKFDRGPALAFNVFDWKGEKVEPVLVQKLADRNNISLSYGFLHHIWFADKYSEDKGKVLQTKEGRGQGLTTNKKKDRDKLGVTVVTAALSFLANFEDVYKLWTFVARFLDADFVEKERWRYTALNQKTIEV 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03110 649 Gene3D - 164 390 IPR015421 GO:0003824
Vimu3g03110 649 SUPERFAMILY PLP-dependent transferases 134 369 IPR015424 -
Vimu3g03110 649 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 73 609 - -
Vimu3g03110 649 Pfam Aminotransferase class-V 177 367 IPR000192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03110 Vimu-Chr3 44878815 44881826 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03110 - - gmx:100820534 1151.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01952 8 25278061 25279310 Vimu3g03110 3 44878815 44881826 ECH
Vimu3g03110 3 44878815 44881826 Vimu3g03110 3 44878815 44881826 ECH
Vimu8g01952 8 25278061 25279310 Vimu3g03110 3 44878815 44881826 PCT