Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03107 ATGAAGATACCCGGCCCCGGCCCGTTGTTTGGCAGAGTTAAGTGCCGTTCTTGGCTTTGGACACGCAGTTTTCACTCTACATCAATGGAATCCTCTGCCAACAACAAAGACCAAGTGCAACCCACACCCGAGGACCCAGAGAAGAAAAAGAAAAAGGAAGAAAAGGCTAGAGAGAAGCAATTGAAGAAAGAGAAGTTTCTTCTCAAGCAAGCCCAGCAGCAAGCACAGCAATCTTCCAATGCTTCTAAAAAAAGTGAAAAGAAAGTTGTAAAGCGTGGTGCGGAGGATGAGAATCCTGAAGATTATGTTGATCCTGAGACTCCAGTGGGTGAGAAGAAGCGAATGGCTCGGCAAATGGCAAAGCAGTATAGTCCAACTGCAGTGGAGAAATCGTGGTATGAGTGGTGGGAGAAATCAAGGTACTATGTGGCAGATGCTAACAGCTCCAAACCACCTTTTGTTATTGTTTTGCCCCCTCCGAATGTGACTGGTGCTCTCCATATAGGTCATGCTCTAACAGCCGCAATAGAGGACACAATGATTCGGTGGAAGAGAATGTCTGGATACAATGCCTTGTGGGTACCTGGGATGGATCATGCTGGGATTGCTACGCAGGTAGTTGTGGAGAAAAAGGTAATGCGGGAAAGAAATCTAACCAGGCATGATCTGGGCCGTGAGAAATTTGTTGCTGAGGTTTGGGAGTGGAAACACAAGTATGGGGGCACAATATTACAACAATTGCGCCGATTAGGAGCCTCTTTGGATTGGTCTCGTGAGTGCTTCACAATGGATGAAAGAAGAAGTAAGGCTGTGACAGAGGCTTTTGTAAAGCTTTACGACCAAGGTCTTGTCTATAGGGACCTTCGTTTAGTGAATTGGGATTGTGTGTTACGAACTGCAATATCTGATATTGAGGTAGATTATATTGATATAAAAGAAAGGAGTCTACTAAAGGTTCCAGAATATGATAAACCAGTGGAATTTGGAGTTTTAACAAAGTTTGCATACCCTGTGGAAGGGAACCTAGGTGAAATTGTTGTTGCCACAACTAGAATTGAAACAATGCTTGGTGACACTGCTATTGCAGTACATCCTAATGATGACAGATATAACCATTTTCATGGAAAATTTGCTATTCATCCATTTAATGGAAGAAAACTTCCTATAATTTGTGATGCTATTCTTGTTGATCCAAAGTTCGGGACTGGTGCTGTTAAGATTACACCTGCCCATGATCCAAATGATTTTGAAGTGGGTAAACGTCACAACCTTGAATTCATTAATGTTTTCACAGATGATGGGAAAATAAATTCCAATGGTGGCTCTGAATTTGTGGGCATGCCACGGTTTAAAGCTCGAGGGGCAGTAACAGAAGCATTACAGAAGAAGGGTCTTTATAGAGGATCTGAAAATAATGAGATGCGCCTTGGGGTTTGTTCAAGAAGCAATGATGTTGTAGAACCCATGATAAAGCCCCAGTGGTACGTCAGTTGCAATGATCTGGCAAAGCAAGCTCTTAATGCTGCTGTTGATGAGGAAAACAATAGGCTAGAGCTTATTCCAAAACAATATTTGGCTGATTGGAAGAGATGGCTAGAAAACATTCGTGATTGGTGTATTTCACGACAGCTTTGGTGGGGTCACCGAGTACCTGCGTGGTATGTCACTTTGGAGGATGACGTGCTGCAGGAATTTGGTGCTTATAACGATCACTGGGTTGTAGCAAGAAATGAAGAGGAGGCCCAAAAGGTGGCTAGCCAGAAGTATAGTGGAAAGAAGTTTCATTTAAACCAGGATCCTGATGTTCTTGATACATGGTTTTCTTCTGGTCTGTTCCCGTTATCTGTGCTGGGATGGCCTGATGACACAGAGGACCTGAAGACATTCTATCCAACTTCTGTTCTGGAAACTGGCCATGATATCATCTTTTTCTGGGTTGCTCGTATGGTGATGTTTGGATTGAAGTTGGGTGGTGATGTGCCTTTTTCAAAGATTTATTTGCATCCCATGATTCGTGATGCACATGGGCGCAAGATGTCCAAGTCCTTGGGGAATGTTATTGATCCCATTGAAGTGATAAATGGGATATCTTTGGAAGGTCTACACAAGAGGTTAGAGGCTGGTAACCTGGACCCCAAAGAACTAGCCACTGCTATAGAGGGTCAGAAGAAGGACTTTCCAAATGGGATTGATGAATGTGGTGCTGATGCTCTCCGTTTTGCACTGGTCTCATACACAGCCCAGTCTGACAAAATTAACCTAGATATTCAAAGGGTGGTTGGGTATCGCCAATGGTGTAATAAACTGTGGAATGCAGTAAGATTTGCTATGAGCAAGCTTGGCGATGATTATATTCCACCTGCAGAATTAGATCCAGATGTTCTCCCATTTAGCTGCCGGTGGATACTCTCAGTGTTGAATAAAACCATAACAAAAACAGTGAAATCTCTAGAATCATTTGAATTCTCACAAGCTACCACTGCTGTGTATTCTTGGTGGCAGTATCAATTGTGTGATGTATTTATCGAAGTGATTAAGCCTTACTTTTCTGGTAATGATACTAAATTTGCTTCTGAAAGACGCTTTGCACAAGATACTTTGTGGTTTTGTCTGGACAATGGCCTTCGATTGCTTCATCCCTTCATGCCTTTTGTCACGGAGGAATTATGGCAACGTCTTCCTTCACCCAAGGAATGTAAGAGAGCAGAATCTATCATGATAAGTGATTATCCATCAGCTGTAGAGGGCTGGAATAATGAAACCGTGGAGAATGAGATGGACATTATTGAGTCTACTATTAAGTCTCTGAGATCACTGGCTAAAGAAAAACGTGACAGGCGACCGGCTTTTGTTCTCTGTCGAACACAGGTGGTTACTGCGATTATTAATAGCCACCAACTGGAGATTGTAACATTAGCTAATCTATCCTCGTTGACAATAATCTCTGAAACTGATGCTGTTCCATCTGGATATGGTGATGCTGTTGTAAATGAGAGCATTTCTGTTTATTTAGAATTACAAGGAACTAATTCTGCAGAGGCAGAACAAGGGAAGATCAAGAAGATAGAAGAGCTGAAGAAACAAATAGAAAGACTAGAGAAGATTATGAATGCTCCAGGTTATGAAGAGAAGGTTTTACCAAATGTTCGAGCAAAGAACCAGGAAAAGCTAGATTCCCTAAAGGAGCGTTTATTGCTAGAGGAAACGGCTGGTCTGAATCTCTAG 3225 0.4245 MKIPGPGPLFGRVKCRSWLWTRSFHSTSMESSANNKDQVQPTPEDPEKKKKKEEKAREKQLKKEKFLLKQAQQQAQQSSNASKKSEKKVVKRGAEDENPEDYVDPETPVGEKKRMARQMAKQYSPTAVEKSWYEWWEKSRYYVADANSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTMIRWKRMSGYNALWVPGMDHAGIATQVVVEKKVMRERNLTRHDLGREKFVAEVWEWKHKYGGTILQQLRRLGASLDWSRECFTMDERRSKAVTEAFVKLYDQGLVYRDLRLVNWDCVLRTAISDIEVDYIDIKERSLLKVPEYDKPVEFGVLTKFAYPVEGNLGEIVVATTRIETMLGDTAIAVHPNDDRYNHFHGKFAIHPFNGRKLPIICDAILVDPKFGTGAVKITPAHDPNDFEVGKRHNLEFINVFTDDGKINSNGGSEFVGMPRFKARGAVTEALQKKGLYRGSENNEMRLGVCSRSNDVVEPMIKPQWYVSCNDLAKQALNAAVDEENNRLELIPKQYLADWKRWLENIRDWCISRQLWWGHRVPAWYVTLEDDVLQEFGAYNDHWVVARNEEEAQKVASQKYSGKKFHLNQDPDVLDTWFSSGLFPLSVLGWPDDTEDLKTFYPTSVLETGHDIIFFWVARMVMFGLKLGGDVPFSKIYLHPMIRDAHGRKMSKSLGNVIDPIEVINGISLEGLHKRLEAGNLDPKELATAIEGQKKDFPNGIDECGADALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFAMSKLGDDYIPPAELDPDVLPFSCRWILSVLNKTITKTVKSLESFEFSQATTAVYSWWQYQLCDVFIEVIKPYFSGNDTKFASERRFAQDTLWFCLDNGLRLLHPFMPFVTEELWQRLPSPKECKRAESIMISDYPSAVEGWNNETVENEMDIIESTIKSLRSLAKEKRDRRPAFVLCRTQVVTAIINSHQLEIVTLANLSSLTIISETDAVPSGYGDAVVNESISVYLELQGTNSAEAEQGKIKKIEELKKQIERLEKIMNAPGYEEKVLPNVRAKNQEKLDSLKERLLLEETAGLNL 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03107 1074 Coils Coil 1012 1035 - -
Vimu3g03107 1074 Hamap Valine--tRNA ligase [valS]. 119 1073 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vimu3g03107 1074 Gene3D - 327 472 IPR009008 GO:0002161|GO:0006418
Vimu3g03107 1074 PRINTS Valyl-tRNA synthetase signature 599 620 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vimu3g03107 1074 PRINTS Valyl-tRNA synthetase signature 364 381 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vimu3g03107 1074 PRINTS Valyl-tRNA synthetase signature 153 164 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vimu3g03107 1074 PRINTS Valyl-tRNA synthetase signature 481 494 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vimu3g03107 1074 PRINTS Valyl-tRNA synthetase signature 630 648 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vimu3g03107 1074 Pfam Anticodon-binding domain of tRNA ligase 800 943 IPR013155 GO:0004812|GO:0006418
Vimu3g03107 1074 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 766 1021 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vimu3g03107 1074 Gene3D - 760 944 - -
Vimu3g03107 1074 CDD Anticodon_Ia_Val 754 893 IPR033705 -
Vimu3g03107 1074 FunFam Valine--tRNA ligase, mitochondrial 446 679 - -
Vimu3g03107 1074 NCBIfam valine--tRNA ligase 119 1057 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vimu3g03107 1074 MobiDBLite consensus disorder prediction 25 110 - -
Vimu3g03107 1074 FunFam Valine--tRNA ligase, mitochondrial 121 319 - -
Vimu3g03107 1074 Coils Coil 68 88 - -
Vimu3g03107 1074 PANTHER VALYL-TRNA SYNTHETASES 96 1068 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vimu3g03107 1074 FunFam Valine--tRNA ligase, mitochondrial 330 370 - -
Vimu3g03107 1074 Pfam tRNA synthetases class I (I, L, M and V) 132 755 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vimu3g03107 1074 SUPERFAMILY Nucleotidylyl transferase 118 764 - -
Vimu3g03107 1074 Coils Coil 919 939 - -
Vimu3g03107 1074 MobiDBLite consensus disorder prediction 25 40 - -
Vimu3g03107 1074 MobiDBLite consensus disorder prediction 67 83 - -
Vimu3g03107 1074 CDD ValRS_core 151 754 - -
Vimu3g03107 1074 Gene3D HUPs 120 319 IPR014729 -
Vimu3g03107 1074 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 160 171 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vimu3g03107 1074 FunFam Valine--tRNA ligase 371 439 - -
Vimu3g03107 1074 MobiDBLite consensus disorder prediction 41 66 - -
Vimu3g03107 1074 Gene3D HUPs 504 753 IPR014729 -
Vimu3g03107 1074 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 326 476 IPR009008 GO:0002161|GO:0006418
Vimu3g03107 1074 MobiDBLite consensus disorder prediction 84 98 - -
Vimu3g03107 1074 FunFam Valine--tRNA ligase, mitochondrial 709 944 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03107 Vimu-Chr3 44845447 44854021 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03107 K01873 - gmx:100798111 1882.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03107 3 44845447 44854021 Vimu3g03107 3 44845447 44854021 ECH