Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03098 ATGGCCGACGAAGACTATGATGAAATGGACATGGGAGATAGAGTTTATTTTGTAATCTATGTATTTCTATTGAATGATTTTTCATTGATTAAAGTGTGCTCGTACAGGTATGAGGATGAGCCACCAGAGCCTGAGATTGAGGAAGGTGCGGAAGAGGATTTGGAAAACAAAAATGACGAATTAACTGGAGATCCTATTGACACTGAGGATAGGGAAGAGGAACAAGTGGACCGCCCTCGAAAGACCTCGAAATATATGACTAAGTACGAGCGTGCTAGGATTTTGGGCACCCGAGCTCTTCAAATCAGTATGAATGCACCTGTCATGGTCGAATTGGAGGGGGAAACTGATCCACTTGAGATTGCTATGAAAGAACTCCGTGAGCGAAAAATACCCTTTACAATCCGGCGTTACTTGCCTGATGGAAGCTACGAGGATTGGGGAGTTGATGAACTGATCGTGGAAGACTCCTGGAAGAGGCAAGTAGGTGGTGATTAA 498 0.4418 MADEDYDEMDMGDRVYFVIYVFLLNDFSLIKVCSYRYEDEPPEPEIEEGAEEDLENKNDELTGDPIDTEDREEEQVDRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03098 165 SMART RNA_pol_Rpb6_2 80 133 IPR006110 GO:0003677|GO:0003899|GO:0006351
Vimu3g03098 165 Pfam RNA polymerase Rpb6 82 133 IPR006110 GO:0003677|GO:0003899|GO:0006351
Vimu3g03098 165 PIRSF RpoK/RPB6 30 156 IPR006111 GO:0003677|GO:0003899|GO:0006351
Vimu3g03098 165 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT K 36 155 - -
Vimu3g03098 165 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC2 30 156 - -
Vimu3g03098 165 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 87 101 IPR020708 GO:0003677|GO:0003899|GO:0006351
Vimu3g03098 165 Hamap DNA-directed RNA polymerase subunit Rpo6 [rpo6]. 84 139 IPR006111 GO:0003677|GO:0003899|GO:0006351
Vimu3g03098 165 Gene3D - 33 156 IPR036161 GO:0003677|GO:0003899|GO:0006351
Vimu3g03098 165 MobiDBLite consensus disorder prediction 39 82 - -
Vimu3g03098 165 SUPERFAMILY RPB6/omega subunit-like 37 155 IPR036161 GO:0003677|GO:0003899|GO:0006351
Vimu3g03098 165 PIRSF RPB6 25 156 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Vimu3g03098 165 MobiDBLite consensus disorder prediction 41 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03098 Vimu-Chr3 44736126 44738031 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03098 K03014 - gmx:100794926 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03098 3 44736126 44738031 Vimu3g03098 3 44736126 44738031 ECH