Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03075 ATGGTTAAGGTAACCATAGTTGGAAGGATGAGCGATGGATTGCCTCTAGCACAAGGACTGAGATATACGAATGAAGAGTATGCATATCTTTCATGTTACAGGCAACAAGCAGAGTTCATTCTCCAAGAAATTTCAAGGGGAGCACTAATAGCTTCCAAGATGACTATTCATGTTCACAATTTCTGCTTCAAGTATCCTTCCCTCTTAATTTTTGTTCAGTTCTTACAATTTCCTTCGAAGTCCGTTTTGGTTCTTATATCGATGAAGTTGCAATTTTCTGTTATACATAATGGTATAATTGCAAACATCAGCAGACAGTACATTGACACAAGAACTCAGGCCAACCTGTCAAAACTTAATGCTAACCGGAAACAAGATGTAGATGTTGCTAGTCAAGATTTTTACGACATTGTAGAAAAAAAGAGAAATTCAGAAACAATGAGAAGATTACCAGTTACTCCTCAACCTAAATCCACAATATGGTGTTCTCCACGTCTTGAGGCGATTGCTTTGAAATGGACACCTATTGTGATCCTTGTAATTACTTCTATGGCTCTTCTATGGGCTAGCTTAGTCCTCACAGATGACTTTTTTATTTCAAGCTGGTAA 609 0.376 MVKVTIVGRMSDGLPLAQGLRYTNEEYAYLSCYRQQAEFILQEISRGALIASKMTIHVHNFCFKYPSLLIFVQFLQFPSKSVLVLISMKLQFSVIHNGIIANISRQYIDTRTQANLSKLNANRKQDVDVASQDFYDIVEKKRNSETMRRLPVTPQPKSTIWCSPRLEAIALKWTPIVILVITSMALLWASLVLTDDFFISSW 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03075 202 Gene3D Longin domain 1 73 - -
Vimu3g03075 202 SUPERFAMILY SNARE-like 1 65 IPR011012 -
Vimu3g03075 202 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 1 65 IPR044565 GO:0005484|GO:0006888|GO:0006890
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03075 Vimu-Chr3 44568042 44569432 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03075 K08517 - gmx:100781527 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03075 3 44568042 44569432 Vimu3g03075 3 44568042 44569432 ECH