Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03069 ATGGATTCAAGAGTAGTTCGAAGTGAAGTGCAGGAGAATGATGAACACTACCCCCACATTGTTCCCTTACAGCAAGTAACACATGGTGAAGAAGATCAAAACTTTAATCATGAGAAGAAGTCTGTTCTGAATAAAGTGAAGGTAAAGGCTAAGAAAATCAAGGACACGATTAAGAAGCATGGCCATCAAGTCCTTGATCGTGGCCGTGAGTATGACAATGAAGATCAACACAACCTTGATGATGATGACTTAGATGAGGATGAAGACACGGACAAGGGCACACAAGTTCACGAAACACCAATTCATGAAAGTGAAGATGTTAATATTATTACACCCAAAAGTGAGCCACTCGAAAATTTAGGAAAGTCAAGAATTGATGTTGGAGATACAACAGTCATGGCAGATGAATCTCATCACGATTCACTACCATTTTCAACTACTGAAACTGATCATAACATAGCCTCTGATCCAGCCAAAGCATTTCGGATGGAAGAGAAAGCAGGGCTTCCTAAGGACAATTTGGAGAGGTCAATAGGATTGGAGGAAGAACATTACTCTCCCGGAAGTATGCCTGATGCATATATTCCTCCCAATCATCAAACCAAAGTCACTTATCCAACTGAAGAAGATTTGATGGTTAAATTGATAAAATTGGATTTGACTACTCTTGATGATATTTATACACCGTGGTCTGGATTAAGATTTTCATGTGTGATGGCTACAGCAGTAAAAGAAGAAACGGAAATCACACCGGTTGAGGAATCTTTTGCAAGAATGAATGTGCAGGAGGAGCCAAAATCTATTTCAGAACTAAACCTGCAGCCAGCTATTGTTGATTCTGAATGCCCTCGTGTTGAAAACCATGATCAGTCCGTGCTACACCTTTCTGCTGGGATGCGAACTCGGTATCCTTCTTCTGAATGTCATGAGCAAACTATATCTCCCAAAGTCAACAAAAACCTGGAAAATGTCACAGACAGTGGACAAAATTTCAGCACCATCACAACCACAGTTGATGAACACTCTTGTAATGAAGCAAACACTTATAAAGTTTTCTCTCCTAAAGATGTCACAGCTTCTGAGGAAGGTTCAGTAGAGAAAGACAACGTGGTAACAAATGCTTCTGACATGTCTGGCTCGACTGCACAGTATGGGAAGGACATTGCTCACTCTCTGACACAGAAATTAGGTCCAGTTTATGACAAGGTTGCAGGTGTAGGAAGTGCAGTGAAGTCCAAAGTGTATGGAACTGAGACAAAAAATGAGATCAAAGAACAAGATAAAGGGGTTTCTGTGAAGGACTATTTGGCTGAGAAGCTAAGGCCTGGTGAAGAGGACAAGGCACTTTCTGAGTTAATTTCTGAAACTTTACATAAGAGGAAGGAAGAGACAGTGAAAAATGAGCATCACTTGGATGGTGGGGATGAGAAAATGCGTGAAGAGAGCTGTGTACATGATCCAGGAAAAGGTGTGGTTGACAAGCTTAAGGGTGTTGTTGGCTCATGGTTTGGCAAATCTGAGGGAAAAGGAGATGAACAATCATCCAAGAATACAAATTCTGGTGCAGAACTGGAACAGTGTCGAAAGTCTCCAAACTCCACCTTTCGTTGTCGTGGTGCGGTGGTGTCTCGAAAGTCTCTAAACGGTGCTGTGGTGCGGTGGTTTTTCGCGGCAATGGTTCACATTGGTGGTTCGTGGTGTAGATCGACATTCGTCTACCAGATTCTATCCATTTCCCGGAACTTGGTTTCGAACCGATGGATATCCATCCACTCGTTAGCACACTGGGCTTATGGAAGCTTCAACTGCAAGAAAACTCCATTCTTCCATTGGCCAAATCGCAGTCGTTGCTCATTTGTCAGATATGATGGCCATCCGTTTGGTGGTGATGGATTTGAATGCATTGAGGAGCCTTTGAAAAACCTAGAATTAAATTGTGATTCTGCTGTGGATGGAACGCTCCGTTTAAACGAGGATTGGGGCTATAACCAAAAGCAGTTTTCACTGAGAAAAGGTTTCATAGAAAGTGTAAGGTTAGATGCTAAGAGGGTTCTTGATGTTCTCCGACAAGATGGTCCCGGTCTCGATGCCAGGTTGGTTTTAGGTGAGTTGCATGTGAGGCCATCAGGGCTTCTCGTGAGGGAGGTTCTCTTTGGAATTTTGAAGAACATAAATTCTGAGAATAAAACTAGGTGTGCAAAGCTGGCATACAAGTTTTTTGTGTGGTGTAGTCAGCAAGAGGGTTACCGGCATACTGCAAATGCATATCACTTACTTATGAACATATATGCGGAGTGTGAGGAGTTTAAGGCATTGTGGAGATTGGTTGATGAAATGATTGAGAAACGGCATCCGGCTACTGCTCGAACTTTCAATATCTTGATTCGTACTTGTGGTGAGGCAGGATTGGCTAAGAAATTGGTGGAGAGGTTCATAAAATCAAAGACATTTAACTTTAGGCCTTTTAAGCACTCCTACAACGCAATCCTACATGGTCTTCTTGTTTTAAATCAGTACAAGTTGATTGAGTGGGTTTATCAGCAGATGTTGCTTGATGGATTTTCTTCAGATATTTTAACTTATAATATTGTCATGTATGCCAAGTACAGACTTGGAAAGTTGGATCAATTTCACAGACTGTTTGACGAGATGGGTAGAAATGGATTTAATCCAGATTTTCACACCTTCAATATTCTACTTCATGTCCTTGGCAAAGGGGACAAACCGCTTGCAGCTCTCAATCTCTTAAATCACATGAGAGAAATGGGTATAGATCCAACTGTGCTTCATTTCACTACATTGATAGATGGACTCAGCAGAGCTGGAAATATGGATGCTTGCAAGTATTTTTTTGATGAAATGATAAAGAATGGATGTATCCCAGATGTGGTGGCTTACACTGTAATGATAACAGGATATGTAGTGGCTGGTGAGCTTGAGAAAGCCCTGGAAATGTATCAAGATATGATTTCTAGAGAACAAATTCCAAATGTTTTTACATACAATTCCATAATTCGGGGATTGTGCAGGGCAGGAAAATTTGATGAAGCATGTTCAATGCTCAACGAAATGGAAACCAAAGGTTGTCGACCAAACTCTGTTGTCTATGATTCTTTAGTGAGTTGTTTACGGAATGCTGGAAAGACTGCTGATGCTCATGAAGTGATAAGACAGATGACAGAGAAGAGGAAGTACACTCACATATATTCAAGATACGAACGGAACAAATGA 3231 0.4126 MDSRVVRSEVQENDEHYPHIVPLQQVTHGEEDQNFNHEKKSVLNKVKVKAKKIKDTIKKHGHQVLDRGREYDNEDQHNLDDDDLDEDEDTDKGTQVHETPIHESEDVNIITPKSEPLENLGKSRIDVGDTTVMADESHHDSLPFSTTETDHNIASDPAKAFRMEEKAGLPKDNLERSIGLEEEHYSPGSMPDAYIPPNHQTKVTYPTEEDLMVKLIKLDLTTLDDIYTPWSGLRFSCVMATAVKEETEITPVEESFARMNVQEEPKSISELNLQPAIVDSECPRVENHDQSVLHLSAGMRTRYPSSECHEQTISPKVNKNLENVTDSGQNFSTITTTVDEHSCNEANTYKVFSPKDVTASEEGSVEKDNVVTNASDMSGSTAQYGKDIAHSLTQKLGPVYDKVAGVGSAVKSKVYGTETKNEIKEQDKGVSVKDYLAEKLRPGEEDKALSELISETLHKRKEETVKNEHHLDGGDEKMREESCVHDPGKGVVDKLKGVVGSWFGKSEGKGDEQSSKNTNSGAELEQCRKSPNSTFRCRGAVVSRKSLNGAVVRWFFAAMVHIGGSWCRSTFVYQILSISRNLVSNRWISIHSLAHWAYGSFNCKKTPFFHWPNRSRCSFVRYDGHPFGGDGFECIEEPLKNLELNCDSAVDGTLRLNEDWGYNQKQFSLRKGFIESVRLDAKRVLDVLRQDGPGLDARLVLGELHVRPSGLLVREVLFGILKNINSENKTRCAKLAYKFFVWCSQQEGYRHTANAYHLLMNIYAECEEFKALWRLVDEMIEKRHPATARTFNILIRTCGEAGLAKKLVERFIKSKTFNFRPFKHSYNAILHGLLVLNQYKLIEWVYQQMLLDGFSSDILTYNIVMYAKYRLGKLDQFHRLFDEMGRNGFNPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIDPTVLHFTTLIDGLSRAGNMDACKYFFDEMIKNGCIPDVVAYTVMITGYVVAGELEKALEMYQDMISREQIPNVFTYNSIIRGLCRAGKFDEACSMLNEMETKGCRPNSVVYDSLVSCLRNAGKTADAHEVIRQMTEKRKYTHIYSRYERNK 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03069 1076 Gene3D Tetratricopeptide repeat domain 951 1075 IPR011990 GO:0005515
Vimu3g03069 1076 MobiDBLite consensus disorder prediction 505 527 - -
Vimu3g03069 1076 MobiDBLite consensus disorder prediction 464 486 - -
Vimu3g03069 1076 Pfam Pentatricopeptide repeat domain 1020 1063 IPR002885 -
Vimu3g03069 1076 Gene3D Tetratricopeptide repeat domain 836 950 IPR011990 GO:0005515
Vimu3g03069 1076 NCBIfam pentatricopeptide repeat 894 927 IPR002885 -
Vimu3g03069 1076 NCBIfam pentatricopeptide repeat 999 1032 IPR002885 -
Vimu3g03069 1076 NCBIfam pentatricopeptide repeat 931 963 IPR002885 -
Vimu3g03069 1076 NCBIfam pentatricopeptide repeat 860 892 IPR002885 -
Vimu3g03069 1076 NCBIfam pentatricopeptide repeat 964 997 IPR002885 -
Vimu3g03069 1076 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 997 1031 IPR002885 -
Vimu3g03069 1076 MobiDBLite consensus disorder prediction 54 107 - -
Vimu3g03069 1076 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 927 961 IPR002885 -
Vimu3g03069 1076 MobiDBLite consensus disorder prediction 90 104 - -
Vimu3g03069 1076 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 888 1063 - -
Vimu3g03069 1076 MobiDBLite consensus disorder prediction 59 75 - -
Vimu3g03069 1076 SUPERFAMILY TPR-like 962 1062 IPR011990 GO:0005515
Vimu3g03069 1076 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 892 926 IPR002885 -
Vimu3g03069 1076 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 857 891 IPR002885 -
Vimu3g03069 1076 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 962 996 IPR002885 -
Vimu3g03069 1076 Pfam PPR repeat 922 954 IPR002885 -
Vimu3g03069 1076 MobiDBLite consensus disorder prediction 513 527 - -
Vimu3g03069 1076 Gene3D Tetratricopeptide repeat domain 712 835 IPR011990 GO:0005515
Vimu3g03069 1076 Pfam PPR repeat family 857 903 IPR002885 -
Vimu3g03069 1076 Pfam PPR repeat family 961 1010 IPR002885 -
Vimu3g03069 1076 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1032 1062 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03069 Vimu-Chr3 44507213 44514953 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03069 775 1072 Miscellaneous Gene Families AT4G11690 27.759 1.55e-33 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03069 - - gmx:100792512 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03069 3 44507213 44514953 Vimu3g03069 3 44507213 44514953 ECH