Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03056 ATGGACAGAATTAGAAGAAAGAGGAGCAACTCACATGAACCAGCCCGCAATCACGTGCCACTCTGGCCCAAAGCCGAAAAACCTAAAACAGTACCCCACTTGCTCCCACATGCACACGGCGCGTCATATCACGCGCAAACCAAGAGCGCCCACTTAACGGCGTTACGTATCTGTCCTATAAAAGGCTATTCGTCTTCTTCTTTGTCACAGACCAGAGGGTTCACGTTCACTGCGCTTCACTTCTCTGTATCTTCTCGTTGTTGTTTTCTTGAACTCGTGTTTTCAGCGAAGATGCGTGAGATTCTTCATATCCAGGGTGGGCAATGCGGAAACCAGATCGGAGCGAAGTTCTGGGAGGTGGTGTGCGCGGAGCACGGGATTGATTCGACGGGAAGGTACCAGGGGAACAATGAGTTGCAACTGGAGCGAGTGAACGTGTACTACAATGAGGCGAGTTGCGGGAGATTTGTTCCTAGGGCTGTGCTCATGGATCTGGAGCCGGGGACCATGGACAGCGTCAGATCTGGACCCTACGGTCAGATTTTCCGCCCGGATAACTTCGTCTTCGGACAGTCCGGCGCCGGAAACAACTGGGCCAAGGGTCACTATACCGAGGGGGCTGAGTTAATTGACTCCGTTCTTGATGTTGTTAGGAAAGAGGCGGAAAACTGTGACTGCCTTCAAGGATTTCAGGTTTGCCACTCTCTCGGTGGTGGAACTGGTTCTGGAATGGGAACACTTTTGATCTCGAAGATCAGGGAAGAGTACCCTGATCGAATGATGCTCACATTTTCCGTGTTCCCATCCCCTAAGGTTTCTGACACTGTTGTTGAGCCATACAATGCAACTCTATCAGTGCACCAGCTCGTTGAGAATGCAGACGAATGCATGGTTTTGGACAACGAAGCTCTCTATGACATCTGCTTCCGTACCCTTAAGCTCACCACTCCAAGCTTTGGAGATCTGAATCACCTAATTTCTGCCACCATGAGTGGCGTAACATGTTGTCTTCGATTCCCTGGTCAACTCAACTCAGATCTTCGCAAACTCGCCGTGAATCTCATTCCCTTCCCTCGTCTGCACTTCTTCATGGTAGGGTTTGCCCCTCTCACTTCCCGTGGATCCCAACAGTACAGGGCTCTCACCGTACCCGAGTTGACCCAACAAATGTGGGATGCCAAGAACATGATGTGTGCAGCTGATCCTCGCCATGGTCGTTACTTGACAGCTTCTGCAATGTTCCGTGGTAAGATGAGCACCAAGGAGGTCGACGAGCAAATGATTAATGTCCAGAACAAGAACTCATCCTACTTTGTGGAATGGATCCCCAACAATGTGAAGTCCACTGTTTGTGATATCCCCCCAACCGGGCTCAAGATGGCATCAACCTTTATTGGGAATTCTACATCTATCCAGGAAATGTTCAGGAGGGTGAGTGAGCAATTCACGGCTATGTTCCGCAGAAAGGCTTTCTTGCACTGGTACACCGGTGAGGGTATGGATGAAATGGAGTTTACTGAAGCTGAGAGCAACATGAATGACCTTGTCTCGGAGTACCAGCAATACCAAGATGCAACTGCGGATGATGAAGGTTATGATTATGAAGACGAAGAAGATGTTCAGGAAGAGGACGAATCTTGA 1641 0.4966 MDRIRRKRSNSHEPARNHVPLWPKAEKPKTVPHLLPHAHGASYHAQTKSAHLTALRICPIKGYSSSSLSQTRGFTFTALHFSVSSRCCFLELVFSAKMREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNNELQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADDEGYDYEDEEDVQEEDES 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03056 546 Pfam Tubulin/FtsZ family, GTPase domain 100 308 IPR003008 GO:0005525
Vimu3g03056 546 SMART Tubulin_C_4 343 480 IPR018316 -
Vimu3g03056 546 MobiDBLite consensus disorder prediction 520 546 - -
Vimu3g03056 546 CDD beta_tubulin 99 523 - -
Vimu3g03056 546 SMART Tubulin_4 144 341 IPR003008 GO:0005525
Vimu3g03056 546 Gene3D Helix hairpin bin 471 527 IPR023123 -
Vimu3g03056 546 PANTHER TUBULIN 100 524 IPR000217 GO:0005874|GO:0007017
Vimu3g03056 546 FunFam Tubulin beta chain 471 532 - -
Vimu3g03056 546 SUPERFAMILY Tubulin nucleotide-binding domain-like 98 340 IPR036525 -
Vimu3g03056 546 SUPERFAMILY Tubulin C-terminal domain-like 341 526 IPR008280 -
Vimu3g03056 546 Coils Coil 505 525 - -
Vimu3g03056 546 Gene3D Tubulin/FtsZ, GTPase domain 98 359 IPR036525 -
Vimu3g03056 546 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 237 243 IPR017975 GO:0005525|GO:0005874|GO:0007017
Vimu3g03056 546 Gene3D - 360 470 IPR037103 -
Vimu3g03056 546 PRINTS Beta-tubulin signature 327 336 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03056 546 PRINTS Beta-tubulin signature 444 467 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03056 546 PRINTS Beta-tubulin signature 426 440 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03056 546 PRINTS Beta-tubulin signature 342 355 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03056 546 PRINTS Beta-tubulin signature 249 261 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03056 546 PRINTS Beta-tubulin signature 509 527 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03056 546 PRINTS Beta-tubulin signature 185 196 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03056 546 PRINTS Beta-tubulin signature 205 223 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03056 546 PRINTS Beta-tubulin signature 309 321 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03056 546 PRINTS Beta-tubulin signature 362 378 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03056 546 PRINTS Beta-tubulin signature 138 155 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03056 546 PRINTS Beta-tubulin signature 474 485 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03056 546 PRINTS Beta-tubulin signature 408 426 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu3g03056 546 MobiDBLite consensus disorder prediction 1 23 - -
Vimu3g03056 546 FunFam Tubulin beta chain 98 359 - -
Vimu3g03056 546 PRINTS Tubulin signature 148 167 IPR000217 GO:0005874|GO:0007017
Vimu3g03056 546 PRINTS Tubulin signature 248 269 IPR000217 GO:0005874|GO:0007017
Vimu3g03056 546 PRINTS Tubulin signature 203 227 IPR000217 GO:0005874|GO:0007017
Vimu3g03056 546 PRINTS Tubulin signature 229 247 IPR000217 GO:0005874|GO:0007017
Vimu3g03056 546 PRINTS Tubulin signature 107 127 IPR000217 GO:0005874|GO:0007017
Vimu3g03056 546 PRINTS Tubulin signature 190 201 IPR000217 GO:0005874|GO:0007017
Vimu3g03056 546 PRINTS Tubulin signature 273 286 IPR000217 GO:0005874|GO:0007017
Vimu3g03056 546 PRINTS Tubulin signature 467 495 IPR000217 GO:0005874|GO:0007017
Vimu3g03056 546 PRINTS Tubulin signature 287 307 IPR000217 GO:0005874|GO:0007017
Vimu3g03056 546 MobiDBLite consensus disorder prediction 528 546 - -
Vimu3g03056 546 FunFam Tubulin beta chain 361 470 - -
Vimu3g03056 546 Pfam Tubulin C-terminal domain 358 479 IPR018316 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03056 Vimu-Chr3 44408366 44411605 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03056 K07375 - zju:107414521 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03056 3 44408366 44411605 Vimu3g03056 3 44408366 44411605 ECH