Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03010 ATGGATGCTCCCCTGCTCGTGAACGGCGAAGGGGCGGTGCTGGTGGCGGAGGATGGCGACTACGTGGCGGCGAGGGGGTTCAAGAAGGTTAAGGAGGTGTTCTGGATCGAAAGCAAGAAGATGTGGCTCATTGCGCTGCCTATTATTTTCAACATATGGTGCCAATACGGTACAAACTCAATCACCAGCATCTTTGTCGGACACCTCGGCGACATTGAGCTCTCTGCTGTCTCTCTCATCAACTCCGTCATTGGCACTTTCGCCTTTGGTTTCATGCTTGGGATGGGAAGTGCAACAGAGACGCTATGTGGACAAGCTTTCGGAGCTGGGCAGGTTAATATGCTTGGCATTTATATGCAACGCTCATGGGTGATTTTATCTGTGACCAGCATTTTGCTGTTGCCACTGTACCTTTTTGCTGCTCCAATTTTGAAGCTTCTTGGTCAGGAAAAAGATATAGCTGATCTTTCTGGAAATTTCGCTATTAAAGTAATTCCGCAATTTCTTTCACTTGCCTTCAATTTTCCAACGCAGAAGTTCCTTCAAGCGCAGAGTAAGGTTAACGTGATTGCATGGATTGGGTTGGGAGCTTTGTTTGTGCATGTTGGGTTGCTCTGGCTCTTAATTCATATGTTAGAGTTAGGCTTAACTGGTGCAGCTTTGGCATTTGATATCACGAGTTGGGTGATTACAACGGCTCAACTTGTTTATGTCGTGGTCTGGTGTAAGGATGGATGGAAGGGATTGTCATGGTCGGCTTTTAAGGATATTTGGGCCTTTGTAAGGCTCTCTCTTGCATCAGCTATAATGCTTTGCCTTGAAGTTTGGTATATGATGAGTGTCATAGTTCTTGCTGGTCACCTTGACAATGCAGTGATTGCTGTTGATTCTCTCTCTATATGCATGAATATCAATGGGTGGGAACTCATGATCTACATTGGAATAAATGCAGCTGTCAGTGTCAGAATTTCCAATGAACTTGGACTCGGACGTCCAAGAACTGCCAAGTACTCTGTCTACGTGACAATCTTTCAGTCACTTTTCTTGGGAATCTTTTTCATGGCTGTTATTTTGGCGACTAAAGACTATTATGCTGTTATTTTTACTAACAGTCCGGTTTTGCAAAAGGCCGTTTCGAAGCTAGGATTCCTCCTGGCTATCACAATGGTTTTAAACAGTGTTCAACCAGTGATTTCAGGTGTTGCTGTTGGAGGTGGGTGGCAGGCCCTGGTGGCCTACGTTAACATAGGTTGTTACTACTTATTTGGGCTTCCACTGGGGTTCCTTCTTGGTTATAAAGCAAATTTGGGGGTTGAGGGACTTTGGGGTGGTATGATGTGTGGAATTCTTCTCCAGACCTTGCTGCTCCTGTTGATACTTTACAAAACCAATTGGAAGAAAGAGGTGGAAGAAACAAATGCTCGCATGCAGATATGGGGTGGACAACAAACTGAGGTTGATAAAATTGCTGCTTCAGCATAA 1482 0.4487 MDAPLLVNGEGAVLVAEDGDYVAARGFKKVKEVFWIESKKMWLIALPIIFNIWCQYGTNSITSIFVGHLGDIELSAVSLINSVIGTFAFGFMLGMGSATETLCGQAFGAGQVNMLGIYMQRSWVILSVTSILLLPLYLFAAPILKLLGQEKDIADLSGNFAIKVIPQFLSLAFNFPTQKFLQAQSKVNVIAWIGLGALFVHVGLLWLLIHMLELGLTGAALAFDITSWVITTAQLVYVVVWCKDGWKGLSWSAFKDIWAFVRLSLASAIMLCLEVWYMMSVIVLAGHLDNAVIAVDSLSICMNINGWELMIYIGINAAVSVRISNELGLGRPRTAKYSVYVTIFQSLFLGIFFMAVILATKDYYAVIFTNSPVLQKAVSKLGFLLAITMVLNSVQPVISGVAVGGGWQALVAYVNIGCYYLFGLPLGFLLGYKANLGVEGLWGGMMCGILLQTLLLLLILYKTNWKKEVEETNARMQIWGGQQTEVDKIAASA 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03010 493 PANTHER MULTIDRUG RESISTANCE PROTEIN 30 465 - -
Vimu3g03010 493 CDD MATE_eukaryotic 37 471 IPR045069 GO:0042910|GO:1990961
Vimu3g03010 493 NCBIfam MATE family efflux transporter 47 442 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu3g03010 493 Pfam MatE 47 206 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu3g03010 493 Pfam MatE 267 429 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03010 Vimu-Chr3 44067925 44071029 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03010 K03327 - gmx:100799559 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03010 3 44067925 44071029 Vimu3g03010 3 44067925 44071029 ECH
Vimu8g02172 8 28111967 28113862 Vimu3g03010 3 44067925 44071029 PCT