Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03005 ATGGTCCTCTTCACAGCCCATGGTCTTGGTTATATCATTTTTTGGTATAAGACACACCAAATCTTAGAGATATTCAAATGGAACAAAGTTGGAGTGTCAAATGTGGCTGGAGAAATTTCTCTACTTGCTGGATTAATCATGTGGGCTGCTACCTTACCTTCCATAAGGCGAAAAGCTTTTGAGCTTTTCTTCTACACTCACTACCTCTACATTGTCTTTGTAATCTTCTATGTGCTACATTTGGGATTTTCCTCCTCTTGCGTGGTGCTTCCAGGATTTTACCTATTCATGATCGACCGCTACCTGAGATTCCTACAGTCTCAGCAAAAAATTCGGTTGGTTTCTGCCAGAGTTTTGCCTTGTGAAGCTGTTGAATTAAATTTCTCTAAGAACCTAGGACTGAGCTATGCCCCCACAAGCACAATTTTCATTAATGTTCCTAGTATTTCCAAGTTGCAGTGGCACCCTTTTACAGTCACCTCCAGCAGTGATACTGATCCTTACACCTTAAGCGTTGTCATCAAAAGTTCAGGAACCTGGTCCAAATCTTTGTACCAGAAGCTATCATCTTCATCTCCATTATCCCACCTTGATGTCTCCATTGAAGGACCCTATGGACCGGGTTCAACCTTTTATTCAAGGCATGAATTGCTTGTGTTGATAAGTGGAGGAAGTGGCATTACTCCTTTCATTTCCATAATCCGTTCACTGGTCTTTAAGGCCAACACTGAAGGTGGCAAAACTCCAAGAGTTCTTCTTCTGTGTGCCTTCAAGAAGTGTATTGATCTCTCAATGATAGACCTCATCCTCCCAGTTTCCGCCACCAGCACCACCTTCGACATCTCACGCTTGCAGCTCCATATTGAAGCTTATGTAACCAGAGAGAAACAGCCAGACACGAATGACAAAAGGCTTACTCAAACATCATGGTTCAAGGCAAATCTATTAGATGAACCAGTTTCTGAAGTCTTAGGAAAAAACAGTTGGCTCTACCTTAGCATTATCATCTCATCCTCCTTTATATTATTCCTTCTACTTATTGGCATCCTAACTAGATACTACATATATCCAATCGACCATAATACGGACCTGATATACCCTAATTTGTCAAGGTCAAGTTTAAGCATGTTATTCATATGCATATCTATTGCCATTGTAGCAACATCTGCTTTCCTATGGAACAAGAAACAGGACAAGGATTTGGGGCAGATTAAAAACATTTACAAATCAGATCAATCAACTTCTCCGGGTTCAGGATACTACAATGCTGACAAAGAATTAGGCAGACTTCCCCTCCAATCCCTTGTTCAAACAGCTAACGTACACTATGGAGAAACACCAGACATAAAAAAAATACTCTCCGGCTGTGATGGATCAAGCATTGGAGTTCTTGTTAGTGGCCCAAGAAAAATGAGACATGAAGTAGCATCAATTTGCACTTCTTGTTCCACAGATGACCTACATTTTGAGTCAGTTAGCTTCAGCTGGTGA 1491 0.4105 MVLFTAHGLGYIIFWYKTHQILEIFKWNKVGVSNVAGEISLLAGLIMWAATLPSIRRKAFELFFYTHYLYIVFVIFYVLHLGFSSSCVVLPGFYLFMIDRYLRFLQSQQKIRLVSARVLPCEAVELNFSKNLGLSYAPTSTIFINVPSISKLQWHPFTVTSSSDTDPYTLSVVIKSSGTWSKSLYQKLSSSSPLSHLDVSIEGPYGPGSTFYSRHELLVLISGGSGITPFISIIRSLVFKANTEGGKTPRVLLLCAFKKCIDLSMIDLILPVSATSTTFDISRLQLHIEAYVTREKQPDTNDKRLTQTSWFKANLLDEPVSEVLGKNSWLYLSIIISSSFILFLLLIGILTRYYIYPIDHNTDLIYPNLSRSSLSMLFICISIAIVATSAFLWNKKQDKDLGQIKNIYKSDQSTSPGSGYYNADKELGRLPLQSLVQTANVHYGETPDIKKILSGCDGSSIGVLVSGPRKMRHEVASICTSCSTDDLHFESVSFSW 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03005 496 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 106 211 IPR017927 GO:0016491
Vimu3g03005 496 FunFam Ferric reduction oxidase 3 204 323 - -
Vimu3g03005 496 SUPERFAMILY Riboflavin synthase domain-like 110 206 IPR017938 -
Vimu3g03005 496 Pfam Ferric reductase like transmembrane component 2 77 IPR013130 -
Vimu3g03005 496 Pfam Ferric reductase NAD binding domain 215 479 IPR013121 GO:0016491
Vimu3g03005 496 Pfam FAD-binding domain 110 207 IPR013112 GO:0016491
Vimu3g03005 496 SFLD Ferric Reductase Domain 1 496 - -
Vimu3g03005 496 PRINTS Cytochrome B-245 heavy chain signature 220 237 IPR000778 GO:0016020|GO:0016491
Vimu3g03005 496 PRINTS Cytochrome B-245 heavy chain signature 197 210 IPR000778 GO:0016020|GO:0016491
Vimu3g03005 496 PRINTS Cytochrome B-245 heavy chain signature 11 31 IPR000778 GO:0016020|GO:0016491
Vimu3g03005 496 SFLD Ferric reductase subgroup (FRE) 1 496 - -
Vimu3g03005 496 PANTHER NADPH OXIDASE 1 494 - -
Vimu3g03005 496 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 199 272 IPR039261 -
Vimu3g03005 496 CDD NOX_Duox_like_FAD_NADP 113 294 - -
Vimu3g03005 496 Gene3D - 199 326 IPR039261 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03005 Vimu-Chr3 44016580 44020986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03005 1 496 Miscellaneous Gene Families AT1G01580 52.800 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03005 K00521 - gmx:100779692 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03005 3 44016580 44020986 Vimu3g03005 3 44016580 44020986 ECH