Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02982 ATGACAAGCCCTTCAGAGAGATACCAAAAACTTGGCTTAAGAGAGTCTCTACAAAAGTGTTACAGATACCCAATTGCCTGCAAAGAGCTAAGCTTTATCCTCAGAGAAGCCTTTCATCAAATTCCCAAAAGTTTGCAATCCATAATCTTCGAAGACACCCTCTTCGCTTTTCGTCTCCTCCCAGAAAAGGTGAAAGTGGTGGTTAGAGTGGATGCTTCTTTGTGTGGATATGACAGGAGTGTAGAAGCAGCACTACCAAATCGAAAAAAGAATGTGGCTGTGACAGAATTTAAGCATGCTATGGTTTCTCATAAGAGACGCAGCAAAGCTCAACTGGTAGAGAAAGCTTCAGTGCAACTTCCACAAGATATTCTTGTACACGTTTTCAGTTTTCTTGATATGAAATCTTTGGTTTCAGCGGGGCTAGTCTGCTGGTCATGGAACATAGCTGCAAATGATAACCATCTCTGGCAGATGCAGTATGTTGTACTGTTCGGTAGTGGTGCTAAACTGAAGCATACGAAACCGGTTGAGGGAAAGAACTATAGGCTTTTGCAGGGAACCGTGGATAATAGACTTATTACTAACTGGAAAGACAGTGTCAAAGGAGCATACACTGTAGTTTGGCTAAATAACGCAAAATGTCCCAATGTACACTCTGGAATATCTGAAATTCAAGATATCAAGCCCGTAACAGCATTCCAGGTTGTGGAATATCTTTTAGATGATTCTCTATCCATAACATCTTCCTCAGACAGTGACAGTGATTATGAAGGAGGGCCAGTTTCCAAGTTATGGGCATATGGGAAGTTCAGGAAGAAAAGGAGACGCGACAACCAAGAAAAGAGACTTCAAGGCACGCTGTTTACTTCAACAATGTGTGAATCTTGTCACTTTGAGAAGATTTTCAAAGCCGAGAAAACAAACGACGTTTGGGATACTCTGCAAAGAGCATATGGAGGTGCTGAGAAGACTAGGAAATATGAGCTACTGTCAATGCTTGATCAAGAATTCGTGGCAAATTATTTTAGTAGGCTACAGCTATTGGTGAATTCCATAAGACCATGGAGAAGTGGTGACAGTACAAAATATGGTAGAGAAAGTCTTGTGGACATTATCCTTCAATCCAAGGATACTGCAAAGATGAAAGAGTTCCAAGGGTCGTTTGAGGCTCATGAGTTGAAGTTGTTATCAAGAAATTCTGACAGGGTCATTGAAGAACAAGCTTTGCAAGCTGAAGTCTCCTAG 1248 0.4135 MTSPSERYQKLGLRESLQKCYRYPIACKELSFILREAFHQIPKSLQSIIFEDTLFAFRLLPEKVKVVVRVDASLCGYDRSVEAALPNRKKNVAVTEFKHAMVSHKRRSKAQLVEKASVQLPQDILVHVFSFLDMKSLVSAGLVCWSWNIAANDNHLWQMQYVVLFGSGAKLKHTKPVEGKNYRLLQGTVDNRLITNWKDSVKGAYTVVWLNNAKCPNVHSGISEIQDIKPVTAFQVVEYLLDDSLSITSSSDSDSDYEGGPVSKLWAYGKFRKKRRRDNQEKRLQGTLFTSTMCESCHFEKIFKAEKTNDVWDTLQRAYGGAEKTRKYELLSMLDQEFVANYFSRLQLLVNSIRPWRSGDSTKYGRESLVDIILQSKDTAKMKEFQGSFEAHELKLLSRNSDRVIEEQALQAEVS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02982 415 SUPERFAMILY F-box domain 119 168 IPR036047 GO:0005515
Vimu3g02982 415 SMART fbox_2 120 160 IPR001810 GO:0005515
Vimu3g02982 415 Pfam F-box-like 119 159 IPR001810 GO:0005515
Vimu3g02982 415 PANTHER OS05G0526300 PROTEIN 1 270 - -
Vimu3g02982 415 Gene3D - 96 158 - -
Vimu3g02982 415 ProSiteProfiles F-box domain profile. 114 160 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02982 Vimu-Chr3 43891755 43895692 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02982 - - gmx:100789652 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02982 3 43891755 43895692 Vimu3g02982 3 43891755 43895692 ECH