Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02979 ATGGAAAACAATTTTTGCCGTGAAACACAAGGGCGTGGCTTGCCTAAAGTTCCATCACTAGTTCAACATATATCAAATGTGAAAAAAAGCTCCTCTTTCAAAGAAAGTGAAAAAAAAGGCCAAGGTGATGAACAGGAACATTCAGTATCTATCAACATGCCATCAAATTGTGAAGAGGTTCGGCTACATGATACCGTGAAAGTTCCCTACAGTGGTGAAACTGATCTTAATAGCAATGGGGCTCCCATTTTCTCTTCATACTCCAAGCCACGAATGCCATCACAATCAATGCCAAATGGCAGCCTGCAACCGGAGCCAGCAAGCTCAGAGAATTTTACAAATCATGAAAGCATCAAAAGGTTGAACGATAAGAGAACTAAGTTTTTCAAAACATGGTACGGTAAACTTGAGGCGAAATTATCAATTCTGCATGGAAGGGTACATACACAAAGTGTAGAAGACGATAACAACTTAAGCAACACTGAGAACCCTTTACCTGTTGATTTGTTCGTGAAAGCATTGGAAGATCCACAAGTACAAACTCCTAAGAAGTCTTCAGAAGAGATGGTGCATCCTCAGGACAAGCAGTGGCCATTCCTTCTTCGGTTTCCGATTTCATCTTTTGGTATTTGTCTAGGAGTTAGCAGTCAAGCAATTCTATGGAAAGCATTGGCCACGTCACCTTCCACTGAATTTCTTCACATAACTCCGAAAATAAATTTCGTGCTGTGGCTTATCTCTGTTGCTGTTGTTGCTACTATTTTCTCCATCTATCTGTTCAAAATAATTCTCTATTTTGAAGCAGTTCGCCGCGAGTACCATCATGCAGTTCGTGTTAACTTCTTCTTTGCCCCATGGATATCCCTTTTGTTCTTAGCTCTTGGAGTTCCTTCATCGATTGCAAAAGAATTGCATCATGCGGTTTGGTACATTCTAATGATTCCACTGTTCCTCCTTATGCTCAAAATATATGGACAGTGGATGTTTGGGGGCAAAAGGAAGCTCTCAAAGGTTGCCAATCCAACAAATATGCTAGCAATTGTTGGAAATTTTGTGGGAGCCTTATTGGGCGCATCTATGGGCCTAAGAGAAGGACCTATTTTTTTCTTGACTCTTGGACTTGCACACTATATGGTGATATTTGTAACTCTCTCACAGATGCTTCCAACAAATAAGACCATCCCCAGGGACCTCCATCCAGTGTTCTTTCTTTTTGTTGCACCACCTAGTGTTGCTTCTTTGGCATTGGCCAAGATTCAGGGTTCTTTTCATTTGGAATCACGGATTTTCTATTTCACTTCCATGTTCCTATATCTCATGCTGGCTGTTCGGGTCAATCTTTTCAGAGGACTCAAATTCTCAATCTCATGGTGGGCCTATACTTTTCCAATGACTGCTGCTGCAATTGCTACCATAAACTACACAAATCAAGTCACTAACGTTGTAACTCAAGCTTTGAGTGTAATATTGAGTCTCATTTCTACATTCGTAGTAACAACAGTGTTTGTCTCGACCATTGTGCATGCCTTTGTCCTCCGAGACCTCTTTCCCAATGACCTTGCCATTGCCACAAGTGAGAGAAAGCAAAAAACTCATAAGAAACGCTTCCCTTTAGGATTTGGAAGCCACGGACATGCCAAAAAGACTGAAAATTACTTGAAGTTTGTGAACTCGGATAAAAATGATTTAGTTTAG 1695 0.4083 MENNFCRETQGRGLPKVPSLVQHISNVKKSSSFKESEKKGQGDEQEHSVSINMPSNCEEVRLHDTVKVPYSGETDLNSNGAPIFSSYSKPRMPSQSMPNGSLQPEPASSENFTNHESIKRLNDKRTKFFKTWYGKLEAKLSILHGRVHTQSVEDDNNLSNTENPLPVDLFVKALEDPQVQTPKKSSEEMVHPQDKQWPFLLRFPISSFGICLGVSSQAILWKALATSPSTEFLHITPKINFVLWLISVAVVATIFSIYLFKIILYFEAVRREYHHAVRVNFFFAPWISLLFLALGVPSSIAKELHHAVWYILMIPLFLLMLKIYGQWMFGGKRKLSKVANPTNMLAIVGNFVGALLGASMGLREGPIFFLTLGLAHYMVIFVTLSQMLPTNKTIPRDLHPVFFLFVAPPSVASLALAKIQGSFHLESRIFYFTSMFLYLMLAVRVNLFRGLKFSISWWAYTFPMTAAAIATINYTNQVTNVVTQALSVILSLISTFVVTTVFVSTIVHAFVLRDLFPNDLAIATSERKQKTHKKRFPLGFGSHGHAKKTENYLKFVNSDKNDLV 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02979 564 PANTHER S-TYPE ANION CHANNEL SLAH3 117 530 IPR030183 GO:0006873|GO:0008308|GO:0016020
Vimu3g02979 564 Pfam Voltage-dependent anion channel 203 506 IPR004695 GO:0016020|GO:0055085
Vimu3g02979 564 MobiDBLite consensus disorder prediction 71 117 - -
Vimu3g02979 564 MobiDBLite consensus disorder prediction 30 45 - -
Vimu3g02979 564 Gene3D - 199 516 IPR038665 -
Vimu3g02979 564 CDD TDT_SLAC1_like 202 505 - -
Vimu3g02979 564 MobiDBLite consensus disorder prediction 25 52 - -
Vimu3g02979 564 MobiDBLite consensus disorder prediction 71 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02979 Vimu-Chr3 43846502 43848807 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02979 K26672 - vra:106771185 1068.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02979 3 43846502 43848807 Vimu3g02979 3 43846502 43848807 ECH