Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02972 ATGAATTTTGTGGTAGAAAACGATGGGGATGAGGATTTTTCTGAAGTCAACGTAGAGCACCAGGAGACATTTTTGGGGCACACCAGTCCAATCAGTCGATGCCGCTTCTCTGCATCTGGAAACAATATTGCTAGCGCTTCTCTGGATGGAACTGTCAGGATATGGACTTATGACACATCAACACCAGTGTCTAGAAACGCAACCATATATTGTGGCACTGAAATTTTGTCCCTTGACTGGGAATGTAAATCAGACCGCTTGCTTCTTATTGGTACATCCGATGGGTGCATTAAAGCATGGAATGTGGATGCAAAGAGAGTTGTCTGTGATCTCAGCACAACTGAATCATTTCCAAGTCCTGTGGAACCTATTTTTGTGTCTGCAGCAGCATCTGGAGGTGCTGGTTCCAAATATGTTGACAACCTGGGTTTCGCTTCTCTAACTGTGTGGAACATGAAGACTTGGAAAGCCATGATCCCCCAGCAATTACTTCTCTATGCTTTAATCACAATGGAAAGATTTTGGCAGCTGCTGCAGTTGATGGAATGA 549 0.4408 MNFVVENDGDEDFSEVNVEHQETFLGHTSPISRCRFSASGNNIASASLDGTVRIWTYDTSTPVSRNATIYCGTEILSLDWECKSDRLLLIGTSDGCIKAWNVDAKRVVCDLSTTESFPSPVEPIFVSAAASGGAGSKYVDNLGFASLTVWNMKTWKAMIPQQLLLYALITMERFWQLLQLME 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02972 182 SUPERFAMILY WD40 repeat-like 20 156 IPR036322 GO:0005515
Vimu3g02972 182 Pfam WD domain, G-beta repeat 21 55 IPR001680 GO:0005515
Vimu3g02972 182 SMART WD40_4 17 56 IPR001680 GO:0005515
Vimu3g02972 182 SMART WD40_4 62 101 IPR001680 GO:0005515
Vimu3g02972 182 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 24 59 - -
Vimu3g02972 182 PANTHER OS05G0299300 PROTEIN 8 158 - -
Vimu3g02972 182 ProSiteProfiles Trp-Asp (WD) repeats profile. 24 65 IPR001680 GO:0005515
Vimu3g02972 182 Gene3D - 6 168 IPR015943 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02972 K24760 - gmx:100795332 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02972 3 43802222 43804274 Vimu3g02972 3 43802222 43804274 ECH