Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02971 ATGATGTCTGGTTCTGTCATGTCCAATCCCAAGATTCATTGCAACAAAAAAGACATGGACACACTCCTGCTCTTCAAACAAGGACTCACAGATCCTTCAGGCATGCTCTCCTCGTGGATCTCAAACTTAGATTGTTGTCAATGGACTGGAGTCAAATGTCACAATATCACTGATCACCTTGAAGTAATTGATTTCTTAGACAAGGACGACAAATCACATTGCCTAACAGGAACACTCAGCTTGTCTCTGTTGGAACTTCAATCTTTGAGTTATTTGAATTTGAGCAACAATAACTTCAAGTTCATGCAATATACCTCAATGTATGGAAACTCCACCAATCTCCAGTATCTAGATTTATCACTAAAGATTTCCCATCTTACCTCACTGCAATATCTTAACCTTGGTGGTGTTTATCTTCACAAGGACATTGACTGGCTTCAACCAGTCACCATGCTCCCTTCACTTAAAGAGTTACACTTGAAGTGTTGTGAACTTGAAAACATCTATCCATATCTTCAACATGCCAATTTCACTTCACTTCAAGTTCTGAATCTTGCTGACAACCGTTTTATGTTTGAGTTGCCTAATTGGTTATTCAATCTTAGTTGTGAAATCTCTCGTATTGACCTCAGTCAAAATCAGATACATAGCCAACTACCCAAATCACTACCAAATTTTAAAAGTCTCGAGTCTTTGGTTTTGTGTGGTAATAATCTCAAAGGACCCATTCCAAGTTGGCTAGGACAACTTGAACAACTACAAGAACTTGATCTTTCTCACAATCTTTTTTCTGGTCCAATCCCTACAAGTTTAGGAAATTTGTCATCGCTGATCAAATTGATGCTCGAGTCAAATGTCTTGAATGGAAACCTTCCAGTGGAGCTCGGACAACTCTTCAAATTAGAAACCCTTAGAGTTTCAAATAATCCCTTAACTGGAATTGTGTCTGAAAAAAGTTTACGTTCTTTAAGAAATTTAAAGAACTTTTCCCTGAGTTCACCCTTCTTGATCTTTGACTTCGATGCCAAGTGGGTCCCTCCTTTTCAACTTCTAAATGTTGAATTGGGTTATTTGAGAGACAAACTTCCTGCATGGCTATTCAGACAAAGCTCTCTGAAATATCTGACCATCAGAGACTCAACTGCTTCATTTGAACCTCTGGACATGTTTTGGAACTTCACTACTCAACTCGAATATATCTCTTTGGAAAACAACACGATCAATGGGGACATGTCAAAGGTGTTTCTAAGTTCAAAAGTGGTTTGGTTAGTGGCCAATAATTTAAGAGGTGGCATGCCACGTATATCACCAGAAGTGGTTGTTTTACACTTACGTAATAACTCATTGTCTGGATCCATTTCTCCTCTTTTGTGTCACAATATGAGACATGAAAGCAATTTAGTGTACTTGGACTTGAGTTATAATAATTTATCAGGAGAACTCACAGATTGTTGGAATAATTGGAAGTCATTGGTTCTTATCAATCTAAGATTCAACAACCTCACAGGCGAGATTCCTCGCTCATTGGGTTCCTTGTCTAACCTTCGTTTTCTGTATCTGAAAAGTAACAAGTTCTTCGGAAAGGTGCCCTTTTCACTGAGAAACTGCAAGAATCTTCGGATACTCGATCTATGCCGCAATAATCTTTCTGGGGTCATACCAACTTGGTTGGGGCAAAAAGTTGAAGGTCTTGAATTGAGATCCAATCAATTCAGTGGCAATATTCCCACGCAGCTATGCCAACTTCGTTCTTTGATGATAATAAATTTGGCGAGTAATAAATTATCAGGACCAATACCCAATTGTCTCCAAAACATCACAGCCATGAATTTTAGTAATTCTGTAACTCGTACATTCAAATTTACCCTTAATTACCCAGGTTTATCAGTACAGATTTCGTGTAGCATTCACCTGCTTATAAAGGGAAACGAGTTACCATATTTTGATGTTATGAATGCCATTGATCTTTCAAGCAACAACTTGTCTGGAAGTGTGCCTCTGGGGATATATATGCTCACTGGATTACAGTCCTTGAATTTGTCCCATAATCAATTGATTGGAACGATACCAAATGAGATTGGCAAGTTACAACAGCTGGAGTCCATTGATCTTTCATCAAATAATTTATCGGGAGAAATTCCTCAGTCCATGTCTGCTTTGCATTTTCTTGGGGTTTTGAATCTATCATTCAACAATTTTATGGGAAAAATCCCAGCAGGGACTCAACTTGGTTCCACAAATCTTAGCTATATCCACAATCCTGACCTATGTGGACCTCCACTTACTAAGATATGTCCTCCAGATGAACATCCCAACAACAAAAAATCTATAAGAGGAGATGATAGTGATGATGACAAATTTCAGGTGCATTCATGGTTCCACATGGGACTAGGAATGGGATTTGCCGCAGGATTTTGGGGACTATTGGGCACCGTTTTCTTCAACAGAAAATGCAGACGTGCTTATTTTAAATTCCTTAACAGAATTTCTTACTTTGTCATCCAAAAGATAAACTCCATTACTGAAATGTAG 2532 0.3835 MMSGSVMSNPKIHCNKKDMDTLLLFKQGLTDPSGMLSSWISNLDCCQWTGVKCHNITDHLEVIDFLDKDDKSHCLTGTLSLSLLELQSLSYLNLSNNNFKFMQYTSMYGNSTNLQYLDLSLKISHLTSLQYLNLGGVYLHKDIDWLQPVTMLPSLKELHLKCCELENIYPYLQHANFTSLQVLNLADNRFMFELPNWLFNLSCEISRIDLSQNQIHSQLPKSLPNFKSLESLVLCGNNLKGPIPSWLGQLEQLQELDLSHNLFSGPIPTSLGNLSSLIKLMLESNVLNGNLPVELGQLFKLETLRVSNNPLTGIVSEKSLRSLRNLKNFSLSSPFLIFDFDAKWVPPFQLLNVELGYLRDKLPAWLFRQSSLKYLTIRDSTASFEPLDMFWNFTTQLEYISLENNTINGDMSKVFLSSKVVWLVANNLRGGMPRISPEVVVLHLRNNSLSGSISPLLCHNMRHESNLVYLDLSYNNLSGELTDCWNNWKSLVLINLRFNNLTGEIPRSLGSLSNLRFLYLKSNKFFGKVPFSLRNCKNLRILDLCRNNLSGVIPTWLGQKVEGLELRSNQFSGNIPTQLCQLRSLMIINLASNKLSGPIPNCLQNITAMNFSNSVTRTFKFTLNYPGLSVQISCSIHLLIKGNELPYFDVMNAIDLSSNNLSGSVPLGIYMLTGLQSLNLSHNQLIGTIPNEIGKLQQLESIDLSSNNLSGEIPQSMSALHFLGVLNLSFNNFMGKIPAGTQLGSTNLSYIHNPDLCGPPLTKICPPDEHPNNKKSIRGDDSDDDKFQVHSWFHMGLGMGFAAGFWGLLGTVFFNRKCRRAYFKFLNRISYFVIQKINSITEM 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02971 843 Gene3D Ribonuclease Inhibitor 203 317 IPR032675 -
Vimu3g02971 843 PRINTS Leucine-rich repeat signature 672 685 - -
Vimu3g02971 843 PRINTS Leucine-rich repeat signature 467 480 - -
Vimu3g02971 843 Pfam Leucine Rich Repeat 698 718 IPR001611 GO:0005515
Vimu3g02971 843 Pfam Leucine Rich Repeat 675 696 IPR001611 GO:0005515
Vimu3g02971 843 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 643 765 - -
Vimu3g02971 843 Pfam Leucine rich repeat 206 262 IPR001611 GO:0005515
Vimu3g02971 843 Pfam Leucine rich repeat 538 595 IPR001611 GO:0005515
Vimu3g02971 843 Gene3D Ribonuclease Inhibitor 122 202 IPR032675 -
Vimu3g02971 843 Gene3D Ribonuclease Inhibitor 14 121 IPR032675 -
Vimu3g02971 843 ProSiteProfiles Leucine-rich repeat profile. 674 696 IPR001611 GO:0005515
Vimu3g02971 843 Gene3D Ribonuclease Inhibitor 318 768 IPR032675 -
Vimu3g02971 843 PANTHER LRR RECEPTOR-LIKE KINASE 175 292 - -
Vimu3g02971 843 SUPERFAMILY RNI-like 436 751 - -
Vimu3g02971 843 Pfam Leucine rich repeat N-terminal domain 16 53 IPR013210 -
Vimu3g02971 843 FunFam Leucine-rich repeat receptor protein kinase EMS1 243 339 - -
Vimu3g02971 843 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 417 619 - -
Vimu3g02971 843 SMART LRR_typ_2 152 174 IPR003591 -
Vimu3g02971 843 SMART LRR_typ_2 250 274 IPR003591 -
Vimu3g02971 843 SMART LRR_typ_2 696 720 IPR003591 -
Vimu3g02971 843 SMART LRR_typ_2 86 110 IPR003591 -
Vimu3g02971 843 SMART LRR_typ_2 298 322 IPR003591 -
Vimu3g02971 843 SMART LRR_typ_2 672 695 IPR003591 -
Vimu3g02971 843 SMART LRR_typ_2 177 201 IPR003591 -
Vimu3g02971 843 SUPERFAMILY L domain-like 34 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02971 Vimu-Chr3 43795606 43798236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02971 2 765 Receptor kinase-like Gene Family AT4G13920 29.398 1.51e-69 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02971 - - vun:114190782 1506.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02971 3 43795606 43798236 Vimu3g02971 3 43795606 43798236 ECH