Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02967 ATGTCTCAGGTTGTTGCTACTCGATCCATTCACTCCTCCCTCACGCGCCCCACCTCAGAATCCGTACACCACAGGCCGCTAACATCGTTGAAGCCTCCAACTTTTGCTTCCAAAGTGTTACCACAACAAAGGAACAACCGTTCCAAAGTTCGCTCCCCCAGTTGCCGCGTCAATGCCAGGAAATCTGCACCCGCTGAAGTTGTCCCCGTATCACCGGCGGATGATTCAAAGATTGAGGAGGAATTGCAGCACTTGCGTGGGATGCAGCAACTTGTTGACACTGCGGTTGGAGTGTGGTCCAAACCAACGTTTAGGAGGAAGACAAAGATTGTTTGCACCATTGGTCCTTCTACCAACACCAGGGAAATGATCTGGAAGCTGGCTGAGGCTGGGATGAATGTCGCCCGTATGAATATGTCTCATGGAGACCATGCTTCTCATCAGAAAGTTATTGATTTGGTTAAAGAATATAACGCTCAATCCAAGGACAATGCCATTGCAATTATGCTTGATACCAAGGGTCCCGAGGTTAGGAGTGGGGATTTGCCTCAACCAATTGTGTTAACACCTGGGCAGGAATTCACTTTTACCATCCAGAGAGGTGTTGGAACTGCAGATTGTGTTAGCGTTAACTATGATGATTTTGTCAATGATGTGGAAGTGGGGGACATGCTTCTTGTTGATGGTGGTATGATGTCTTTGGTGGTGAAGTCTAAGACAGAGGATTCTGTGAAATGTGAAGTTGTTGATGGAGGAGAGCTCAAGTCAAGGAGACATTTGAATGTTAGAGGAAAAAGTGCAACACTGCCTTCCATAACTGAGAAGGATTGGGATGACATTAAATTTGGAGTGGATAACAAAGTTGATTTCTATGCCGTTTCTTTTGTAAAGGATGCACAAGTAGTTCATGAACTGAAGAATTATTTGAAAAGCTGTGATGCTGATATACACGTCATTGTAAAAATTGAAAGCGCAGACTCTATACCAAACTTGCATTCCATTATTACAGCATCTGATGGGGCCATGGTTGCAAGAGGAGATCTTGGTGCAGAGCTCCCTATTGAAGAAGTTCCACTTTTGCAGGAAGAGATAATCAGCATATGCCGAAGCATGGGAAAGGCCGTTATTGTGGCAACAAATATGCTGGAAAGCATGATTGTTCACCCGACACCAACCAGAGCTGAGGTATCTGATATTGCAATTGCTGTTAGAGAAGGTTCTGACGCAATAATGCTTTCTGGGGAAACTGCTCATGGAAAGTTCCCACTAAAAGCTGTGAAAGTAATGCACACTGTAGCATTACGGACAGAGGCCACTTTAACTGGTGGTCAATTGCCACCTAATATTGGCAACGTATTCAAGAACCACATGAGTGAGATGTTTGCTTACCATGCAACCATTATGTCTAATACCCTTGGAACCTCAACTGTCGTCTTCACTAGATCAGGCTTCATGGCTATCCTTTTGAGTCACTACAGACCTTCGGGCACCATATTTACATTTACAGATCAAAAGAGGACACAGCAAAGGTTGGCCTTGTATCAAGGAATCTGTCCAATTTACATGAAATTCTCTGAAGATGCCGAAGAGACTTTCAGAAGAGCCCTGGATCTGCTCCAGAAGCAAGGAATGGTGAAAGCAGGAGAAGAAGTAGCACTGGTACAAAGTGGCAAACAACCCATATGGAGGTCCCAATCCACTCACAATATTCAGGTCCGAACAGTGTAA 1728 0.4468 MSQVVATRSIHSSLTRPTSESVHHRPLTSLKPPTFASKVLPQQRNNRSKVRSPSCRVNARKSAPAEVVPVSPADDSKIEEELQHLRGMQQLVDTAVGVWSKPTFRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARMNMSHGDHASHQKVIDLVKEYNAQSKDNAIAIMLDTKGPEVRSGDLPQPIVLTPGQEFTFTIQRGVGTADCVSVNYDDFVNDVEVGDMLLVDGGMMSLVVKSKTEDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCDADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIISICRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGSDAIMLSGETAHGKFPLKAVKVMHTVALRTEATLTGGQLPPNIGNVFKNHMSEMFAYHATIMSNTLGTSTVVFTRSGFMAILLSHYRPSGTIFTFTDQKRTQQRLALYQGICPIYMKFSEDAEETFRRALDLLQKQGMVKAGEEVALVQSGKQPIWRSQSTHNIQVRTV 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02967 575 MobiDBLite consensus disorder prediction 1 74 - -
Vimu3g02967 575 FunFam Pyruvate kinase 271 436 - -
Vimu3g02967 575 Gene3D - 108 433 IPR040442 -
Vimu3g02967 575 MobiDBLite consensus disorder prediction 35 55 - -
Vimu3g02967 575 PANTHER PYRUVATE KINASE 82 553 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu3g02967 575 ProSitePatterns Pyruvate kinase active site signature. 316 328 IPR018209 GO:0004743|GO:0006096
Vimu3g02967 575 Gene3D - 176 269 IPR015806 GO:0004743|GO:0006096
Vimu3g02967 575 Pfam Pyruvate kinase, alpha/beta domain 468 556 IPR015795 -
Vimu3g02967 575 Gene3D - 448 575 IPR036918 -
Vimu3g02967 575 FunFam Pyruvate kinase 176 269 - -
Vimu3g02967 575 FunFam Pyruvate kinase 437 556 - -
Vimu3g02967 575 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 94 440 IPR015813 GO:0003824
Vimu3g02967 575 SUPERFAMILY PK beta-barrel domain-like 175 266 IPR011037 -
Vimu3g02967 575 PRINTS Pyruvate kinase family signature 370 394 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu3g02967 575 PRINTS Pyruvate kinase family signature 288 302 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu3g02967 575 PRINTS Pyruvate kinase family signature 345 369 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu3g02967 575 PRINTS Pyruvate kinase family signature 164 180 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu3g02967 575 PRINTS Pyruvate kinase family signature 395 413 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu3g02967 575 PRINTS Pyruvate kinase family signature 414 430 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu3g02967 575 PRINTS Pyruvate kinase family signature 318 344 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu3g02967 575 NCBIfam pyruvate kinase 106 575 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vimu3g02967 575 SUPERFAMILY PK C-terminal domain-like 424 575 IPR036918 -
Vimu3g02967 575 MobiDBLite consensus disorder prediction 1 25 - -
Vimu3g02967 575 Pfam Pyruvate kinase, barrel domain 106 441 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02967 Vimu-Chr3 43761263 43765794 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02967 K00873 - gmx:100818193 1058.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02967 3 43761263 43765794 Vimu3g02967 3 43761263 43765794 ECH