Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02942 ATGGGGGATCGAGGAGAGGACGAGGATTTGCAAATGGCGATTCGAATGAGCATGCAGCGCGCGACGCCGGAGACGAAGCGCAGCAAGCCGCAGGATGCCGCCGCCGGGGCGGTTTCGGAATCGTCGGAAGATTCGCCAGAGTCTAAGACCCGGCGGAGGGAGCTCATGGCGGCGGCGGCGGAGAAGCGGATAGCGGCTGCGGTAAGGGTTTTGCCATCATCATTGCCACCGGGGAAGAAAAGTGGTGAATTGGGGAGGAGAGAGGAGTTGCGTTTGAAGAGTGTGAATTTGAGTAAGGAACTTTCAGTGGAAGAAGCAAATCAATTGTTTTCTATGGTGTTTGGAAATGAAGTCTCTAAGGGGATTCTTGCACAGTGGAGCAACCAGGGAATACGGTTTAGCTCTGATCCTGTAACATCAATGGGCCTAGTGCAGCATGAAGGTGGTCCCTGTGGCGTTTTGGCAGCTATACAAGCATTTGTACTTAAACACATCATTTTCTTCAGTGATGAGTTGAAAGATATACCACGCCTGCCACAGAAGGGTCTGGGTGCATCATTTAAAAGTCTGTCTGTTCCATCTTATAATTTTTCTTCACTCACTGAAGGTGTAAAAGTAAGATTCTCCTATGTCCAGCCTTTTGAAGGGATTTCAGAGGATGAGGTACCTTGGTTATTGGCCCTCGTAAGAAGTATGGCTGAAATTTTATTTTCATGTGGAAGTAATAGAAGGGCTGTGATTGCAACTTTGAGCTTTCCAGAGAATGACATTCCGCGTTTTGAAGGGATTTCAGAGGATGAGGTTATTGCAAAATCACTTCAAGGTCTTTCTATTGAATCTGCCGTCGATCTGCAGAAAGTTCTTAGAGTCGAAACATGCACATCGCAAACAACTGCATTGCAACGGCTTGAAGCAAATCTTCCCTTCTTCCAAAGTCGAATGGGAGCATTGCTTTTCCTAATCTCTGCTTTACTTTCTCGAGGACTGGACTTGGTTCAAAGCGACAGGGATGATCCCAGCCTACCACTGGTTACAGCACCTTTTGGGCATGCCTCTCAGGAAATTGTGAACCTACTGCTCTGTGGGGAGGCTGTCCCTAATGTGTTTGATGGAAGGATGGATTTAGGGGGAGGGATGTTTCTGAAAGGCATATCTCGAGATGTGGAAGTTGGATTTCTCACACTTTTAGAATCCCTGAATTTTTGCAAGGTTGGTCAGCATCTGAAATCTCCAAAATGGCCTATATGGGTTGTGGGGAGTGAATCCCATTACACTGTGCTGTTTGCTCTAGACCCCAGCGTTCAAAGTGAGAATGAACTGGAAGGAAGGGAAACACAGATACGCAAAGCTTTTGATGCACAAGATCAGAGTGGAGGTGGTGGTTTCATTAGTGTGGAAGGTTTCCATCAAGTCCTCAGAGAAACAGATATCAAATTTCCACCAGAGAGGCTGGAACATCTTTGCTCTGCAGGGTTCATTGTGTGGAGTGAATTCTGGCAAGTAATTTTGGATCTAGACAAAAGTTTGGGAGGTTTGAAGGATTCATCAGGATTGATGGGTAAGAAGGTCTTTGATCTATACCATTTTAATGGGATTGCTAAATCAGATCTGAATGGCAGCCAAGTAAATTCTGCGGGTGAAACTCCACTACAAAGACCCCGGCTGACAAAATTGAGAGTTTCAGTGCCTCCAAGGTGGACGCCTGAGGAATTTATGGCAGATGTGAAGGTTTCATCTGCTCCTAGTGCTAGTGACTCTGCTGGGAAGGACAATGAAGTATCTAAACCGGAGCCTTCCCAGCATGCGCCTTTGGTGGACTGCATAAGGACACGCTGGGCCCGTGCTACCTGCAGCTGGTTTGGGGATCCTCCTAGTATAGTTTGA 1884 0.4697 MGDRGEDEDLQMAIRMSMQRATPETKRSKPQDAAAGAVSESSEDSPESKTRRRELMAAAAEKRIAAAVRVLPSSLPPGKKSGELGRREELRLKSVNLSKELSVEEANQLFSMVFGNEVSKGILAQWSNQGIRFSSDPVTSMGLVQHEGGPCGVLAAIQAFVLKHIIFFSDELKDIPRLPQKGLGASFKSLSVPSYNFSSLTEGVKVRFSYVQPFEGISEDEVPWLLALVRSMAEILFSCGSNRRAVIATLSFPENDIPRFEGISEDEVIAKSLQGLSIESAVDLQKVLRVETCTSQTTALQRLEANLPFFQSRMGALLFLISALLSRGLDLVQSDRDDPSLPLVTAPFGHASQEIVNLLLCGEAVPNVFDGRMDLGGGMFLKGISRDVEVGFLTLLESLNFCKVGQHLKSPKWPIWVVGSESHYTVLFALDPSVQSENELEGRETQIRKAFDAQDQSGGGGFISVEGFHQVLRETDIKFPPERLEHLCSAGFIVWSEFWQVILDLDKSLGGLKDSSGLMGKKVFDLYHFNGIAKSDLNGSQVNSAGETPLQRPRLTKLRVSVPPRWTPEEFMADVKVSSAPSASDSAGKDNEVSKPEPSQHAPLVDCIRTRWARATCSWFGDPPSIV 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02942 627 Coils Coil 87 107 - -
Vimu3g02942 627 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 5 24 IPR003903 -
Vimu3g02942 627 PANTHER UNCHARACTERIZED 28 625 IPR039785 GO:0004843|GO:0071108|GO:1990380
Vimu3g02942 627 MobiDBLite consensus disorder prediction 576 601 - -
Vimu3g02942 627 SMART DUF4205_3 110 504 IPR025257 -
Vimu3g02942 627 SMART uim 5 24 IPR003903 -
Vimu3g02942 627 MobiDBLite consensus disorder prediction 1 56 - -
Vimu3g02942 627 Pfam Deubiquitinating enzyme MINDY-3/4, conserved domain 112 441 IPR025257 -
Vimu3g02942 627 SUPERFAMILY EF-hand 443 503 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02942 Vimu-Chr3 43465723 43480901 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02942 K22647 - gmx:100813222 1055.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02942 3 43465723 43480901 Vimu3g02942 3 43465723 43480901 ECH