Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02844 ATGTTTTCTGGATCTATTCCCATAAGTTTGGGAAATTTATCATCCTTAGATTTCTTGGCGGTCACCTCAAATAGATTGACAGGAGTTGTGTCTGAGAAAACTTTTGTCAGACTGTCAAAATTGAAGAAGTTAGGCATATTCATATCACCACCATTAATCTTTGATTTTGACTCCAACTGGATTCCTCCCTTTCAACTTGAGCGATTAAATATTGCGTTTTCAGGAACTAAATTTCCTGAGTGGTTATACACCCAAAAGTCTCTTGAATCTTTAAGTATTTATGAATCATCATTTGAGGCTAGCGAAAAATTTTGGAATTTTCTGTCAAGAATGAAAGAAGTGAATTTAGAACAGAATTCGATAGATGGGAACTTGTCAAACGCCTTGTTGAACTCTACTTTCATATCTTTGTCATCAAATGATCTGAAGGGTTGGTTGCCTAGATTATCATCGAACGTGGTCGTTGTACGGTTGTCAAACAACTCATTATCAGGAAACTTGTCTTCTCTCTTATGTGATGATGAGATGTTGAATGGAAAAAGTAATTTGGTGTACTTGGACGTATCACTTAATCGTCTGTCGGGAGGACTTACAAATTGTTGGGGAAACTGGAAATCATTGGTTCATGTTAATTTGGGAAGCAATTATTTAACAGGCAAGATACCTCCATCAATGGGCCTGTTGCTTAATCTCACATCATTCCATCTACATGAAAATAAGCTCTATGGAGAAATTCCCTCCTCGCTTAAAAATTGTCACTCTTTGTTAATCTTCAATGTTCGGGAAAACAACTTTTCAAGAAATATACCAAATTGGATACCAGATGCTGCAAAAGTTCTTCAATTAAGATCCAATCATTTTACAGGAAATATCCCACCACATATATGCCAAATGTCTTCCCTCATTGTTTTGGATATTGCAGATAACATAATCTCAGGACATATACCCAACTGCCTTCACAATATCACAGCCTTAGTTTCCGGCAAAACTTCACCCCACATGCTTTCTTTTGCCTTTCCCTTGCCTGATGGTCGCTACTACACCTTTGAAGACAATCTTGAGCTGGTTACAAAGGGTCAAGCAATAGAATACGGAAAAAACCTGCACTTTATGAACTTAATTGATATGTCAAGTAACAATTTTTCTGGAGTATTACCTCCACAAATGTTTAGACTCCTTGGATTATGTTCCTTGAACTTGTCCCACAATAAATTAACTGGAAAATTTCCAAATGAGATTGGAAACATGAACCAGTTGGAGTCCCTTGATCTTTCAGCAAACCAACTTTGGGGTGAAATTCCCCAAACTCTATCAAATCTTTCCTTTTTGAGTTACTTAAACCTGTCATTCAACAATTTCACAGGCAAAATACCATCAGGAACACAGCTCCAAGGTTTCGGTGAACTTAGCTATATCGGTAATACTTATCTTTGTGGACCTCCACTTACAGAAACATGCTTCCAAGATTATGTAAAGCAAATAAAAGAAGATGAGGATAAATCTGTATTCTGGTCATGGTTTTATACTGGAACAGAAACTGGATTTGGCATGAGTTTTTTGGGAGTGTGTTGTGCCCTTTTCTTAAATGGAAAATGGAGGCACGCTTACTTCAAGTTTCTCTGTTGTTTGATAGATCGACTTTATGTTATGGGACTCATCACTATAAATTCCTTCCCTTTTGCGTAG 1686 0.3701 MFSGSIPISLGNLSSLDFLAVTSNRLTGVVSEKTFVRLSKLKKLGIFISPPLIFDFDSNWIPPFQLERLNIAFSGTKFPEWLYTQKSLESLSIYESSFEASEKFWNFLSRMKEVNLEQNSIDGNLSNALLNSTFISLSSNDLKGWLPRLSSNVVVVRLSNNSLSGNLSSLLCDDEMLNGKSNLVYLDVSLNRLSGGLTNCWGNWKSLVHVNLGSNYLTGKIPPSMGLLLNLTSFHLHENKLYGEIPSSLKNCHSLLIFNVRENNFSRNIPNWIPDAAKVLQLRSNHFTGNIPPHICQMSSLIVLDIADNIISGHIPNCLHNITALVSGKTSPHMLSFAFPLPDGRYYTFEDNLELVTKGQAIEYGKNLHFMNLIDMSSNNFSGVLPPQMFRLLGLCSLNLSHNKLTGKFPNEIGNMNQLESLDLSANQLWGEIPQTLSNLSFLSYLNLSFNNFTGKIPSGTQLQGFGELSYIGNTYLCGPPLTETCFQDYVKQIKEDEDKSVFWSWFYTGTETGFGMSFLGVCCALFLNGKWRHAYFKFLCCLIDRLYVMGLITINSFPFA 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02844 561 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 174 265 - -
Vimu3g02844 561 Pfam Leucine Rich Repeat 300 321 IPR001611 GO:0005515
Vimu3g02844 561 SUPERFAMILY L domain-like 4 169 - -
Vimu3g02844 561 Pfam Leucine rich repeat 377 429 IPR001611 GO:0005515
Vimu3g02844 561 Gene3D Ribonuclease Inhibitor 277 494 IPR032675 -
Vimu3g02844 561 Gene3D Ribonuclease Inhibitor 148 276 IPR032675 -
Vimu3g02844 561 PANTHER LRR RECEPTOR-LIKE KINASE 3 540 - -
Vimu3g02844 561 SUPERFAMILY L domain-like 133 483 - -
Vimu3g02844 561 FunFam Tyrosine-sulfated glycopeptide receptor 1 266 490 - -
Vimu3g02844 561 PRINTS Leucine-rich repeat signature 416 429 - -
Vimu3g02844 561 PRINTS Leucine-rich repeat signature 395 408 - -
Vimu3g02844 561 Gene3D Ribonuclease Inhibitor 1 147 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02844 Vimu-Chr3 42650652 42652337 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02844 63 532 Receptor kinase-like Gene Family AT2G33060 33.669 1.22e-58 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02844 - - var:108325603 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02844 3 42650652 42652337 Vimu3g02844 3 42650652 42652337 ECH