Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02818 ATGGGTGACAGGAGAAAGAAGCAGCGTCGTCTGCAGGACTCGTCAACCTCCTCATCCTCTTCGTCGTCGTCTGATTCCGACCACTCTTCGCGGCGGCGGCGACGGCGGCGCGAGAAGGAGCGGCGCAGAAAGAGCGGGGAGAAGGAGGAGCGAAGGAGAAAGAGGAGAGACAGAGAGAGGAAAAAGAGGAAGAGGCTCCATGATTCCGATGACTCCTCCAACTCTTCGGAGGATGAAGACGAGCAACCTAGGGTTCTGCCCGAAACTGTGGTAACTGAAATGATGAGAGAGTTCCCCAACGTCGGCAACGATTTGAAGCAGCTTTTGCAAATGATTGATAACGGACAAGCTGTTGACATAAAGGGTATATCAGAACGATCTTTGGCGAAGCATTTGAAGAAGCTGTTTCTTTCGTTAAACCTCAAGGAGAATGGAGATAGGGTTTTCTTGCTATCTTCTAAAGGTCGTCCAACTTTGGATGTTCTTGGCCCACTCATTCACTCCTACACAAATTCCATAAATGAGCAAGCTGAAGCTTCTGCGCCAGTGGTGCCTGAATCCAGTTCAGTTCCAGTGGATGCTGGAAATGCAAAGATGGTGGATGACCATGTGATCGCGTCACCAGATGATCATTCTGTTGGTCCAAGGAAAAGGATGATTGGCCCTGCAATGCCATCAGCTGAATTACTGGCTGCCGCTGCCAAATTAACCGAGGCGCAAACTGAGCTCAGAGAGGCCGAATTGGATGATGATACTGAACTATTTATTGGACCTCCACCACCAGCTATGGTTACTGAAGCAGAATCAGCTAACGAAGCAGAACGTTTTGAAGAGGTGACCAGAATAATGGAAGTTGAGGCTGATAGCCCATATGATGTTCTAGGAGTCAATCATAATATGTCCGATGCAAATGTAAAGAAAAGGTACTGGAAGATATCACTATTGGTTCATCCAGATAAATGCTCTCATCCGCAAGCCCACCAGGCTTTCATTAAGTTAAATAAAGCTTTCAAAGAGTTACAAGATCCAGAAAAGCGGAAAGCAATGGATGAGAAAATCAAACTCAAGCAAGAACAAGAGGAATTGAAGGCTGAACTTAAAACCATGCGTGAAGCTGCATTGTGGAGAAGATCTCAAGGTATTTCCATGGAGGGTGATGAAGAACTGCTGGCACAGACAGAGGTTAAAGTGGAGCCTAAAAGGGATGAGTGGATGACAACACTGCCACCGGAAAGGAAACCTGGTGGTGTGACTATGCAATCAACCAAGTTTAGCAGGGGCCCAAAGGAAGGTAGAGGTGATACTAGTGTTTGGACAGACACCCCTTTGGATAGGGCCCAGAAAGCAAAGATGAATTATTTGGAGGCATACAATGAAGCTACTGCACTAGCTTCAAATGATGAGGATAAAAAAAGGGCCAGTGAGGATGCAGACTTGGTGGACAAATACAATAAAGCAAAACGGTCAAAAACATTGGTGCAGAAACATCAAGAAGAGGTGGCTAACAAATCCAAGAAAAAGTCCAAGCAAGTGAAACAACAGCCAGGGAAGCAAGAGTGGATGGGTCAACATCCATGGAAGCCATGGGACCGTGAAAAGGATCTGACAGCTGGAAGGAAAAGTGTAAATTTTGATTCAGAAAGCATGACTAAGGATTTATCTTCAAGGTTTTCTTCTGGAAACTTTCAGAGGAACTTCCTTTGA 1704 0.4589 MGDRRKKQRRLQDSSTSSSSSSSSDSDHSSRRRRRRREKERRRKSGEKEERRRKRRDRERKKRKRLHDSDDSSNSSEDEDEQPRVLPETVVTEMMREFPNVGNDLKQLLQMIDNGQAVDIKGISERSLAKHLKKLFLSLNLKENGDRVFLLSSKGRPTLDVLGPLIHSYTNSINEQAEASAPVVPESSSVPVDAGNAKMVDDHVIASPDDHSVGPRKRMIGPAMPSAELLAAAAKLTEAQTELREAELDDDTELFIGPPPPAMVTEAESANEAERFEEVTRIMEVEADSPYDVLGVNHNMSDANVKKRYWKISLLVHPDKCSHPQAHQAFIKLNKAFKELQDPEKRKAMDEKIKLKQEQEELKAELKTMREAALWRRSQGISMEGDEELLAQTEVKVEPKRDEWMTTLPPERKPGGVTMQSTKFSRGPKEGRGDTSVWTDTPLDRAQKAKMNYLEAYNEATALASNDEDKKRASEDADLVDKYNKAKRSKTLVQKHQEEVANKSKKKSKQVKQQPGKQEWMGQHPWKPWDREKDLTAGRKSVNFDSESMTKDLSSRFSSGNFQRNFL 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02818 567 Coils Coil 443 463 - -
Vimu3g02818 567 Pfam Protein of unknown function (DUF3752) 409 558 IPR022226 -
Vimu3g02818 567 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 6 567 - -
Vimu3g02818 567 MobiDBLite consensus disorder prediction 409 439 - -
Vimu3g02818 567 MobiDBLite consensus disorder prediction 524 540 - -
Vimu3g02818 567 Coils Coil 345 372 - -
Vimu3g02818 567 MobiDBLite consensus disorder prediction 63 85 - -
Vimu3g02818 567 SMART dnaj_3 288 345 IPR001623 -
Vimu3g02818 567 MobiDBLite consensus disorder prediction 1 85 - -
Vimu3g02818 567 CDD DnaJ 290 342 IPR001623 -
Vimu3g02818 567 Gene3D DnaJ domain 272 373 IPR036869 -
Vimu3g02818 567 SUPERFAMILY Chaperone J-domain 263 347 IPR036869 -
Vimu3g02818 567 PRINTS DnaJ domain signature 309 324 IPR001623 -
Vimu3g02818 567 PRINTS DnaJ domain signature 325 345 IPR001623 -
Vimu3g02818 567 PRINTS DnaJ domain signature 291 309 IPR001623 -
Vimu3g02818 567 MobiDBLite consensus disorder prediction 465 506 - -
Vimu3g02818 567 Pfam DnaJ domain 290 350 IPR001623 -
Vimu3g02818 567 MobiDBLite consensus disorder prediction 465 567 - -
Vimu3g02818 567 Coils Coil 229 249 - -
Vimu3g02818 567 ProSiteProfiles dnaJ domain profile. 289 353 IPR001623 -
Vimu3g02818 567 MobiDBLite consensus disorder prediction 541 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02818 Vimu-Chr3 42426034 42433566 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02818 - - gmx:100788598 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02818 3 42426034 42433566 Vimu3g02818 3 42426034 42433566 ECH