Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02364 ATGGAATTTGAAGGCAACAAGAACGCCACTGTCACTGAAATTGAAATTTGTCTTGTTCACAACGACCAAGCCGATTTGCAAGCTCTCTTACAGATCCTTCCATCTGATTTGCATCAAACTCTCCTTGATCAACCTAATCGTTCTCAACTTCTGGAGGTTGTATTGGATTTGGGTCGTTTTCCAGAAGCACGTTATTTAGGAGAGCATGGACGTCACTGTTTAAGGAACACAGAGGTAACTGTGAAGGAGTTGGAATATGCTGAACAAGCTGTTGGAGAGTTTGGCAAGGACAATAGAGCTGGAATTGAGGGTACTTTGCACAGAGTATCTGCAATTAGGAGTAGGAATGGTCACATAGTTGGCTTGACTTGTCGTGTGGGAAGAGCAATCACTGGCCAGATTGACATGGTTTATGACCTGCTTCAATACGGGAAGAGCATTTTGTTTGTTGGAAGGCCTGGGGTTGGCAAAACTACTGTTATGCGTGAAATTGCTCGGGTGCTGTCTGAAGAGCTTCACAAAAGAGTGGTGGTTGTTGATACCAGCAATGAAATTGGGGGTGATGGCAATATCCCACATGCAGCAATCGGTGGAGCACGAAGAATGCAGGTGCGGGAGCCAGCAATGCAACACAGAGTGATGATTGAGGCAGTGGAAAATCACATGCCTGAGGTGATTATAGTTGATGAGATTGGCACCGAAGCTGAAGCTCATGCTTGCCGATCAATTGCCGAGCGCGGGATCATTCTTATTGGGACTGCTCATGGACAGAAGCTTGAGAATATCATCAAGAATCCTACCCTTTCTGATCTGATTGGCGGAATAGAAATTGTTACTCTGGGAGATGCAGAAGCCAAGGCAAGAAATTGTCCGAAGATAGTTCTTGAGAGGAAAGCACCTCCAACATTTGATTTCTTAATTGAGATGAGAGATAGACACTACTGGCTCACACATCAGACTGATAAAAGTGTAGATATGTTGCTTCGGGGAAAAAGTCCACAGGTTGAGGTAAATTCTTTACCGCTGAAACGTATTGAAGAGGAAGATGTGTTAAAGTTGGAGCCTTGCGGCTGCATTATCTCTTCGTCTGATCCTAAGGCCATGAACTTCTCTACTTTGATTAATGACTCTGAAAACAATGTACCTCATGGTGGCTGCAATGAGACTCTGATCCTTTCTTCTGCAGGAATATACTCCAACGGCCATTGTATTGCCGGAGAGTTTGGAGCAGCTGCAGAAAAGTGTAGGATGCAAGTAAGATGTGGCGGACACAGCTATGAAGGGACTTCGTATGTGGCTGATGAAGGCACTCCTTTTGTGATCATTGACATGATGAATTTGAACCATGTTTGGGTGGACATGGAGACAGAAACAGCATGGGTTGAAGGTGGTGCAACGTTGGGAGAGACTTATTATGCAATATCTGAAGCAAGCAACGAGCATGGATTCTCAGCTGGGTCATGTCCAACTGTTGGCGTGGGAGGACACATTGGAGGTGGTGGTTTTGGGATGCTGTCTAGAAAATATGGACTTGCAGCGGACAACGTGGTGGATGCCCTACTTGTTGATGCTGATCAAAATTTGTTGGACCGTGAAACCATGGGAGAAGATGTGTTCTGGGCTATTAGAGGAGGAGGAGGAGGTCTTTGGGGGATCATCTATGCCTGGAAAATCCAGTTGCTGAAAGTGCCAAAGGTTGTAACCAGTTTCACCGTATCAAGAACAGGCACAAAAAGTGATGTTGCCAATCTGGTGCACAAATGGCAATGTGTGGCACCAAACTTGGAAGATGACTACTATCTGTCATGCTTTGTTGGTGCTGGTTTGCCGCAAGCTAAAACCAAAGGGTTATCAGTAACACTCAATGGTTTCTATCTTGGTCCTAGAAGCAGTGCTGCATCCATTCTAAACGAGACTTTTCCGGAGTTGGGTGTTACGGAAGAAGAATGCATAGAAATGAGTTGGATTGAGTCTATTGTTTTCTTCTCTGGCCTAAGTGATGGAGCTTCGGTGTCTGACTTGAAGAACAGGTATCTGCAAGAAAAAGAATATTTCAAGGCGAAATCAGATTATGTAAGAAAGCACGTTCCTCTTGTGGGGATAGAAACTGCACTGGACATCCTTGAAAAGGAGGCAAAGGGATATGTTATTCTGGATGCTTATGGTGGAAAGATGCATAATATAAGCAATGATGCAATAGCTTTTCCCCACAGAAGAGGAAACCTGTTTACAATACAGTATCTGATATATTGGAAAGAAGGTGAGAATGAGAAAAGCAGTGATTATGTAGATTGGATAAGAGGATTCTATGATGCTATGACTCCCTTTGTTTCAAGGGGTCCAAGAGCTGCATATATTAATTACATGGACTTTGACCTTGGAGTGAGGAAGAGGATAAATGTGAAAGATGGTGTGGAAAATGCAAGAGATTGGGGTGAAAAGTACTTCTTGAGTAACTACGACAGATTGGTGAGAGCCAAGACCATGATTGATCCTAACAACGTTTTCACCAATGAACAGGGCATTCCTCCTATGTCGTCAAAGCACACACCAAACAAATGA 2562 0.4395 MEFEGNKNATVTEIEICLVHNDQADLQALLQILPSDLHQTLLDQPNRSQLLEVVLDLGRFPEARYLGEHGRHCLRNTEVTVKELEYAEQAVGEFGKDNRAGIEGTLHRVSAIRSRNGHIVGLTCRVGRAITGQIDMVYDLLQYGKSILFVGRPGVGKTTVMREIARVLSEELHKRVVVVDTSNEIGGDGNIPHAAIGGARRMQVREPAMQHRVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGIILIGTAHGQKLENIIKNPTLSDLIGGIEIVTLGDAEAKARNCPKIVLERKAPPTFDFLIEMRDRHYWLTHQTDKSVDMLLRGKSPQVEVNSLPLKRIEEEDVLKLEPCGCIISSSDPKAMNFSTLINDSENNVPHGGCNETLILSSAGIYSNGHCIAGEFGAAAEKCRMQVRCGGHSYEGTSYVADEGTPFVIIDMMNLNHVWVDMETETAWVEGGATLGETYYAISEASNEHGFSAGSCPTVGVGGHIGGGGFGMLSRKYGLAADNVVDALLVDADQNLLDRETMGEDVFWAIRGGGGGLWGIIYAWKIQLLKVPKVVTSFTVSRTGTKSDVANLVHKWQCVAPNLEDDYYLSCFVGAGLPQAKTKGLSVTLNGFYLGPRSSAASILNETFPELGVTEEECIEMSWIESIVFFSGLSDGASVSDLKNRYLQEKEYFKAKSDYVRKHVPLVGIETALDILEKEAKGYVILDAYGGKMHNISNDAIAFPHRRGNLFTIQYLIYWKEGENEKSSDYVDWIRGFYDAMTPFVSRGPRAAYINYMDFDLGVRKRINVKDGVENARDWGEKYFLSNYDRLVRAKTMIDPNNVFTNEQGIPPMSSKHTPNK 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02364 853 SMART AAA_5 143 282 IPR003593 GO:0016887
Vimu3g02364 853 Pfam Sporulation stage III, protein AA 118 272 IPR045735 -
Vimu3g02364 853 Gene3D - 452 844 IPR016169 -
Vimu3g02364 853 PANTHER OS08G0158400 PROTEIN 412 845 - -
Vimu3g02364 853 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 263 IPR027417 -
Vimu3g02364 853 Gene3D - 122 327 IPR027417 -
Vimu3g02364 853 CDD AAA 138 233 - -
Vimu3g02364 853 Pfam Berberine and berberine like 784 843 IPR012951 GO:0016491|GO:0050660
Vimu3g02364 853 SUPERFAMILY FAD-binding/transporter-associated domain-like 410 564 IPR036318 GO:0050660
Vimu3g02364 853 ProSiteProfiles PCMH-type FAD-binding domain profile. 390 563 IPR016166 GO:0071949
Vimu3g02364 853 Gene3D - 407 447 IPR016167 -
Vimu3g02364 853 Pfam FAD binding domain 410 528 IPR006094 GO:0050660
Vimu3g02364 853 Gene3D - 566 780 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02364 Vimu-Chr3 38080291 38089576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02364 402 843 Miscellaneous Gene Families AT1G30760 43.468 1.44e-118 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02364 - - vun:114190730 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02364 3 38080291 38089576 Vimu3g02364 3 38080291 38089576 ECH