Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02041 ATGGACGGTGATTCCTCTTGGAGTGCTCGTCTCTCTTCCGCCTCTAGGCGCTACCAATCGGCTCTCCAATCTCGATCAGACATGTTCATGGGTTTCGATGAAAATGATGGGGACGATGATATAAGGGAGGAGTTTCTCTGCCCATTTTGTTCCGAGTACTTTGATATTGTTGGATTATGCTGCCACATTGATGAAGAACATCCAATGGAAGCAAAAAATGGGGTATGTCCTGTTTGTGCATTGAGGGTGGGGGTTGATATGCGAAAAAGGAAATCACGGAAAGGTGGATCTTATTCAACACTATCATTATTGAGGAAGGAGCTACGAGAAGGAAATTTGCAGTCCCTTTTTGGTGGATCTTCATGTATAGTGTCCTCATCTAATGCAGCTGATCCACTGCTGTCATCATTTATACTGCCTTTAGCTAATGAACATACCAGCTCTCAGCCTCACTTGCACACTGAGGCAAGGTCATCTAAAAAAGGCTCAGATGAGAGTGTGTCAACAAGGAAATTCACGGAGTTGACTGCTTCAGTAGTGGGTAATTCACATGCGATACCTGGAATGTATGGTTTGCCTGGTGAAATTGTCTATGTATTTGATCAGAGTGGGAATAAGTAG 621 0.438 MDGDSSWSARLSSASRRYQSALQSRSDMFMGFDENDGDDDIREEFLCPFCSEYFDIVGLCCHIDEEHPMEAKNGVCPVCALRVGVDMRKRKSRKGGSYSTLSLLRKELREGNLQSLFGGSSCIVSSSNAADPLLSSFILPLANEHTSSQPHLHTEARSSKKGSDESVSTRKFTELTASVVGNSHAIPGMYGLPGEIVYVFDQSGNK 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02041 206 Pfam Drought induced 19 protein (Di19), zinc-binding 43 88 IPR008598 -
Vimu3g02041 206 MobiDBLite consensus disorder prediction 150 168 - -
Vimu3g02041 206 Pfam Stress-induced protein Di19, C-terminal 101 176 IPR027935 -
Vimu3g02041 206 PANTHER PROTEIN DEHYDRATION-INDUCED 19 30 166 IPR033347 -
Vimu3g02041 206 MobiDBLite consensus disorder prediction 148 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02041 Vimu-Chr3 35306061 35308441 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02041 - - pvu:PHAVU_007G199600g 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02041 3 35306061 35308441 Vimu3g02041 3 35306061 35308441 ECH
Vimu6g02083 6 18553465 18556469 Vimu3g02041 3 35306061 35308441 ECH
Vimu3g02041 3 35306061 35308441 Vimu6g02083 6 18553465 18556469 ECH