Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02033 ATGGACCAGCTTCAATCAGCCACCACCTATGATGCACAGAAGCTTAACCCTCAACCACCTTCCAACTCCACCAATGGCGAACCGCTCTATGAAGACTTTGACAGCACCTGTTCCACGCCTTACGTCAGTGCCCCTTCAAGTCCCGGCCGTGGGCCGCACCCAGGCTTCTTCTACAGTGCTCCTGCCAGTCCAATGCACTTCGCCATAACTGCCTCTTCCTCCTATGACAAGAGTCCTTCTTCCGCACCAATGGGTTACGAGTTTGAATTCTCCGCCCGGTTCGGTTCAGCGGGTTCCGCCGGTTCAGGCTCCATGAGCTCTGCTGACGAGTTGTTCCTGAATGGTCAGATCCGTCCCATGAAGCTCTCAAGCCACCTTGAACGCCCCCAAGTCCTTGCTCCGTTGCTGGATCTGGAAGGTGAAGAGGAGGAAGAGGAGGCCGAGGCTGTTAGCGTTAGTGTTGTCCGAGGCAGAGATCTGAGGTTGCGGGACAAGTCTGTTAGGAGGAGAACCAGATCCATGTCTCCTCTCCGAAGCAACACGCCTTTGGAGTGGGCAGAGAACGAAGATGTTGTTGGCGGGGATCATGACAATAACGTGAGCTCCGGGAAGGAAATGGAAGTTAGTTCCTTGGAAACTGAGAAGCAAAGGGAGAACACAGAGGATGGTTTGAGTTTAGGTTTGGAGACAACTCCTTCAGTATCAGGTTCGGCTTCGTCCTCTCGGTCTTCTTCGGCTGGGAGAAGTTCGAAGAGGTGGATTTTCTTAAAGGACTTTCTCAGAAGCAAAAGTGAAGGAAGGAGTAACAACAAGTTCTGGTCCAGCATTTCCTTCTCCCCAACCGCCAAAGACAAGAAACTCACCACTTCCACCGCTCAAACTCTCAATGTCCCAACAAACACCAAGAACGGGCCCTCTTCTTCTGAAGCCACGCACAAGTCCAAAGGAAGTAGCTCTCAGGCTTGGGCCCGGAGAATGAGCGGGAAGCCCACCAACGGTGTTGGGAAGAGGCGCGTGCCACCTTCACCACACGAGTTGCATTATAAAGCGAACAGGGCCCAAGCTGAAGAGTTGAGAAAAAAGACCTTTCTGCCCTATAGGCAAGGTCTGCTTGGGTGCTTGGGGTTTAGTTCTAAGGGTTATGGAGCCATGAATGGCTTCGCCAGAGCCCTAAACCCTGTTTCTTCCAGGTAA 1194 0.5268 MDQLQSATTYDAQKLNPQPPSNSTNGEPLYEDFDSTCSTPYVSAPSSPGRGPHPGFFYSAPASPMHFAITASSSYDKSPSSAPMGYEFEFSARFGSAGSAGSGSMSSADELFLNGQIRPMKLSSHLERPQVLAPLLDLEGEEEEEEAEAVSVSVVRGRDLRLRDKSVRRRTRSMSPLRSNTPLEWAENEDVVGGDHDNNVSSGKEMEVSSLETEKQRENTEDGLSLGLETTPSVSGSASSSRSSSAGRSSKRWIFLKDFLRSKSEGRSNNKFWSSISFSPTAKDKKLTTSTAQTLNVPTNTKNGPSSSEATHKSKGSSSQAWARRMSGKPTNGVGKRRVPPSPHELHYKANRAQAEELRKKTFLPYRQGLLGCLGFSSKGYGAMNGFARALNPVSSR 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02033 397 MobiDBLite consensus disorder prediction 281 353 - -
Vimu3g02033 397 PANTHER OS07G0619500 PROTEIN 34 386 - -
Vimu3g02033 397 MobiDBLite consensus disorder prediction 281 326 - -
Vimu3g02033 397 MobiDBLite consensus disorder prediction 1 52 - -
Vimu3g02033 397 MobiDBLite consensus disorder prediction 223 250 - -
Vimu3g02033 397 MobiDBLite consensus disorder prediction 208 222 - -
Vimu3g02033 397 MobiDBLite consensus disorder prediction 163 250 - -
Vimu3g02033 397 Pfam Protein of unknown function (DUF1645) 108 365 IPR012442 -
Vimu3g02033 397 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02033 Vimu-Chr3 35212710 35213903 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02033 - - pvu:PHAVU_007G200400g 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01915 6 17268731 17269696 Vimu3g02033 3 35212710 35213903 ECH
Vimu3g02033 3 35212710 35213903 Vimu3g02033 3 35212710 35213903 ECH
Vimu6g01915 6 17268731 17269696 Vimu3g02033 3 35212710 35213903 PCT