Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01231 ATGAAGTCAAGATTTCTCAGAGGGTGCCTCAACAAGTGCAAGAAAATGTGCCTCAACAAGTGCATATCTTGCGAGGAATGCTGTGAACGGGCTTGGTGGTGTTGTTTGCATGAAGGTTGTTCAGATATTCCAAGTGATGTTCCAAAGGGTCACTTGGTTGTGTATGTGGGAGAGAAGCACAAGAGATATGTGATAAAGATTGGTTTGCTCCATCATCCCCTCTTCAGGGCCTTGTTGGATCAAGCTCAGGAAGAGTACGATTTCATTGCTGACTCAAAACTCTGCATTCCCTGCGATGAACACCTCTTTCTCAGTGTCCTTCGATGTGCTACCTCCCCACAGAACCAACCAGTCTGTCTGTGTCTCTGA 369 0.4634 MKSRFLRGCLNKCKKMCLNKCISCEECCERAWWCCLHEGCSDIPSDVPKGHLVVYVGEKHKRYVIKIGLLHHPLFRALLDQAQEEYDFIADSKLCIPCDEHLFLSVLRCATSPQNQPVCLCL 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01231 122 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 26 105 IPR003676 GO:0009733
Vimu3g01231 122 Pfam Auxin responsive protein 30 109 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01231 Vimu-Chr3 21478691 21479059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01231 30 111 Calmodulin-binding Proteins AT4G34750 46.429 5.10e-21 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01231 K14488 - gmx:100812927 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01231 3 21478691 21479059 Vimu3g01231 3 21478691 21479059 ECH
Vimu6g02507 6 21812299 21812676 Vimu3g01231 3 21478691 21479059 PCT