Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01212 ATGGGCATACTCTACGACGACGTGGTGATCATAAGCCAGCCACAAAAAGACGGCGACCCAACTGTTCTCACTGTCAATTGCCCTGACAAAACTGGTCTGGGCTGTGATTTGTGCCGCATCATACTTTTCTTTGGTCTCAACATACTCAGAGGAGATGTTTCAACGGATGGGAAATGGTGCTACATAGTTTTCTGGGTGGTTGGAAAAAACAGGACGAGGTGGAGTTTGCTGACGAAGAGGCTGATTGAGGCATGCCCTTCTTGCTCCTCGGCTTCTGGAATCTCTTATTATCGATCTGAGTTGCAGCTCTCCAAGCCTCCTGATGTCTTTCTTTTGAATTTTTGCTGTCATGACCGGAAAGGGCTTTTGCATGATGTTACTGAGGTTCTTTGTGAGCTAGAACTTACTATAAAGAAAGTGAAGGTATCTACTACACCTGATGGCAAAGTGATGGATCTGTTTTTCATCACAGATGCCAGAGAACTTCTACACACAAAGAAGAGAAAGGATGAAACAATTGAACATCTAACAGAGATTTTGGGGGATGCCATAATTTCTATTGACATAGACTTGGTTGGCCCAGAAATTACAGCTTGTACCCAGGCATCTCCATTGCTTCCAACTGCAATCACAGAAGATGGCTTTGATTTGGAATTGCCCGATTTGGCTCGGGGAGGAACTTTGAGGTCAGATTATGTTTCTGTCATGATGGACAATACGCTTAGTCCTGCTCACACCCTTGTCCAAATTATGTGCCAAGATCACAAAGGTCTACTTTATGACATCATGAGAACTCTGAAAGACTACAACATTCAGATTTCTTATGGGCGTTTCACTACAAAACCTAGAGGAAAATGTGAGATTGACTTGTTCATCATGCAAGCAGATGGCAAAAAGATTGTTGACCCAAACAAGCAGAATTCATTGTCATCACGCCTTAGAATGGAACTATTTCGACCACTCAGGGTAGCGATTGTGAGTAGGGGCCCGGATACCGAGCTTCTGGTCGCAAATCCAGTGGAGTTATCTGGCAAGGGCCGACCTCTTGTTTTTCATGATATCACTCTTGCACTCAAAATGCTAGGCACTTGCATATTTTCGGCTAAAGTTGGGAGACACGTAATTGGAGATCGTGAGTGGGAGGTTTATAGAGTCTTGCTTGATGAAGGGGAGGGGTTATCTTTTCCAAAGAACAAGATTGAGGAGGGAGTTTGGAAAATGCTGATGGGTTGGGAGTAA 1239 0.4407 MGILYDDVVIISQPQKDGDPTVLTVNCPDKTGLGCDLCRIILFFGLNILRGDVSTDGKWCYIVFWVVGKNRTRWSLLTKRLIEACPSCSSASGISYYRSELQLSKPPDVFLLNFCCHDRKGLLHDVTEVLCELELTIKKVKVSTTPDGKVMDLFFITDARELLHTKKRKDETIEHLTEILGDAIISIDIDLVGPEITACTQASPLLPTAITEDGFDLELPDLARGGTLRSDYVSVMMDNTLSPAHTLVQIMCQDHKGLLYDIMRTLKDYNIQISYGRFTTKPRGKCEIDLFIMQADGKKIVDPNKQNSLSSRLRMELFRPLRVAIVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLGTCIFSAKVGRHVIGDREWEVYRVLLDEGEGLSFPKNKIEEGVWKMLMGWE 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01212 412 SUPERFAMILY ACT-like 19 81 IPR045865 -
Vimu3g01212 412 SUPERFAMILY ACT-like 244 295 IPR045865 -
Vimu3g01212 412 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 9 386 IPR040217 -
Vimu3g01212 412 SUPERFAMILY ACT-like 107 180 IPR045865 -
Vimu3g01212 412 Gene3D - 108 192 - -
Vimu3g01212 412 ProSiteProfiles ACT domain profile. 111 194 IPR002912 -
Vimu3g01212 412 Pfam ACT domain 111 167 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01212 Vimu-Chr3 20700761 20703330 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01212 - - gmx:100816138 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01212 3 20700761 20703330 Vimu3g01212 3 20700761 20703330 ECH
Vimu6g02477 6 21526762 21529174 Vimu3g01212 3 20700761 20703330 PCT