Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02883 ATGAGAAGAAGGCCAGGAATTGGAGGTTTGCAGACGCACGCTGCTGCGAGGGATCAATTCCGTTTGCTGGGTGAAAATGTCGCAAAGATCAGAACGGATTTGATGAAGGAGCAGCTTGCCACCTTTCGCTCTCAGCTCGAAGATTTCGCTCGCAAACACAAGAATGACATACGCAAGAACCCTGCATTCAGATCACAGTTTCATGAGATGTGCGCTAAAGTTGGAGTGGATCCCTTGGCTTCAAACAAGGGTTTCTGGGCAGAGCTGTTAGGAATTGGTGACTTCTACTATGAACTGGGAGTTCAAATAGTGGATATTTGCTTGGCTACTAGAGCACACAATGGAGGACTGATCAACCTGCAGGAACTCTGCCATCTCCTTCGCCAGAGACGAAAAAGTGATCGAGGAGTTGTTTCAGAGGATGATTGCCTGCGAGCTATTAGTAAGCTGAAGGTGGTTGCCCATAAACTAGATCATGCACTTTTTGAGTTTGATGTAGATAATGTATGCTTGACTCAAATCCTTGTGTATAAGGTTTCTGTTATCCCATATGTGTTGGGTAGTGGTTTTGAAGTAATTTCTGTTGGAAAGAGAAAACTTGTTCGTTCAGTTCCAACTGAGTTGAACAAAGACCACAACGAAATTCTAGAACTTGCCCAGGGTCAAGGATTTGTGACAGTCGATGAAGTAGAGAGACGATTATCTTGGAGTTCTGGCCGAGCCATTGATGCCCTCGATACATTACTTGATGAAGGACTTGCCATGATTGATGACGGCCATAGAGATGGTAGACGGAGGTACTGGTTTCCTTGTGTGTCTCCTATCTCATCTTCAACAGCAGTTGATTCCTAA 852 0.4484 MRRRPGIGGLQTHAAARDQFRLLGENVAKIRTDLMKEQLATFRSQLEDFARKHKNDIRKNPAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRAHNGGLINLQELCHLLRQRRKSDRGVVSEDDCLRAISKLKVVAHKLDHALFEFDVDNVCLTQILVYKVSVIPYVLGSGFEVISVGKRKLVRSVPTELNKDHNEILELAQGQGFVTVDEVERRLSWSSGRAIDALDTLLDEGLAMIDDGHRDGRRRYWFPCVSPISSSTAVDS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02883 283 SUPERFAMILY "Winged helix" DNA-binding domain 208 271 IPR036390 -
Vimu2g02883 283 Pfam EAP30/Vps36 family 6 258 IPR040608 -
Vimu2g02883 283 PIRSF ESCRT2_Vps22 172 279 IPR016689 GO:0000814|GO:0071985
Vimu2g02883 283 PIRSF ESCRT2_Vps22 1 163 IPR016689 GO:0000814|GO:0071985
Vimu2g02883 283 Gene3D - 24 85 - -
Vimu2g02883 283 FunFam Vacuolar protein sorting-associated protein 205 283 - -
Vimu2g02883 283 PANTHER EAP30 SUBUNIT OF ELL COMPLEX 1 154 IPR016689 GO:0000814|GO:0071985
Vimu2g02883 283 Gene3D - 91 161 IPR036388 -
Vimu2g02883 283 SUPERFAMILY "Winged helix" DNA-binding domain 24 153 IPR036390 -
Vimu2g02883 283 Gene3D - 205 283 IPR036388 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02883 K12188 - gmx:100781799 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02883 2 27181005 27184895 Vimu2g02883 2 27181005 27184895 ECH