Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02470 ATGAGTTTTGTGCCAAAGGAGACAATCGAAGTCATCGCACAGAGCATCGGCATCACCAATTTGTCCCCCGATGTTGCCCTCGCTCTCGCCCCCGATCTCGAATATCGCATTCGGGAAATCATGCAGGAGTCGATAAAATGCATGCGCCATTCCATGAGAACTTTTCTTAGTACAGAGGATGTGGATACTGCACTTGCATTGAGAAATTTGGAGCCGATATATGGGTTCGCCTCTAATGATCCTCCGAGGTTCAAAAGAGCTGCTGGACATAAGGATTTGTTCTACATCGATGACAAAGATGTGGATATCAAAGATCTTATTGAAGCTCCTTTACCGAAAGCACCCCTTGATACATCAATTACCAGTCACTGGTTGGCTATTGAAGGTGTGCAACCTGCAATTCCTGAAAACGCTCCAGTTGAAGCTCCTTCCTCTGAGATAAGAAAATCTGAATATAAGGAAGATGGGCTTTCTGTTGATGTTAAATTACCTGTTAAACATTTAATAACAAGGGAGCTTCAGCTCTACTACGAGAAAATAACTGACCTTACATTAAATAAGTCTGGATCCATTCCGTTCAGAAGAGCATTGGTTAGCTTGGCAACGGACTCAGGACTCCATCCCTTAGTTCCATATTTCACATGTTTTGTTGCCGATGAGGTGGCACGTAATTTACATAATTTAGCTGTTTTATTTGCCTTGATGCGCCTTGTGCGGAGCCTTGTGCAAAATTCTCAGATACACATAGAACTTTATTTACATCAATTGATGCCACCTATCATTACTTGCCTTGTTGCAAAAAGGATAGGAAGCAGACTATCTGACGATCACTGGGAGCTTAGGAACTTCAGTGCTAATCTTGTTGCTTCAATATGCCAAAGATTTGGGCATATTTATCACAATCTGCAGCCACGTGTGACAAAGACATTTCTTCATTCTTTCTTGGACCCTACAAAAGCTCTGCCTCAGCACTATGGTGCAATTAAAGGGATAGAAGCTCTTGGATCAAGAGTGATTCACTTGCTTATACTTCCAAATCTCGAGCCATATTTGCATCTTCTTGAGCCAGAAATGCAACCTGAGAAACAAAAAAATGAAATGAAGAGGCATGAAGCTTGGCAGGTTTATGGAGCTTTGTTGGGTGCAGTAGGCAAATGTGTGCATGAAAAGGTAAAAAATTTCAGCAATTTGTTCTCTCTTCCAACTCGGCTTACTTCAAGAGGCAGTGGAAAAGCCATTATTCCAATGTCAGGCAAACGAAAAGCCAGTGCCGACAATCTGATGCAGCAGCAACCTCCAATGAAGAAACTTTCAACAGATGGCCATGGAGGTGTAATACCAATGAACTCCATGTCAGTTGACATGCAAGGCTCAACAGGGGGATTTTCCACCATGATGGGGGCTCCTGCGATGTCGATGACTCGTCAAATTTCAACCGACAAGGCGCCAGGGAGGGAGATTGTAGATCAACAAAGGAAGGTATCTGCCACTCTTGCTCAGGCTTGGAAGGATGACATTGATGCAGGAAATTTGGTGTCATCAGTGGTTGAATTGTTTGGCGAAAGGGTGTTACCATTTGTTCCAAACCCTGAAGCATTTATGTTTTTGTAG 1611 0.4302 MSFVPKETIEVIAQSIGITNLSPDVALALAPDLEYRIREIMQESIKCMRHSMRTFLSTEDVDTALALRNLEPIYGFASNDPPRFKRAAGHKDLFYIDDKDVDIKDLIEAPLPKAPLDTSITSHWLAIEGVQPAIPENAPVEAPSSEIRKSEYKEDGLSVDVKLPVKHLITRELQLYYEKITDLTLNKSGSIPFRRALVSLATDSGLHPLVPYFTCFVADEVARNLHNLAVLFALMRLVRSLVQNSQIHIELYLHQLMPPIITCLVAKRIGSRLSDDHWELRNFSANLVASICQRFGHIYHNLQPRVTKTFLHSFLDPTKALPQHYGAIKGIEALGSRVIHLLILPNLEPYLHLLEPEMQPEKQKNEMKRHEAWQVYGALLGAVGKCVHEKVKNFSNLFSLPTRLTSRGSGKAIIPMSGKRKASADNLMQQQPPMKKLSTDGHGGVIPMNSMSVDMQGSTGGFSTMMGAPAMSMTRQISTDKAPGREIVDQQRKVSATLAQAWKDDIDAGNLVSSVVELFGERVLPFVPNPEAFMFL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02470 536 Pfam TATA box binding protein associated factor (TAF) 1 65 IPR004823 -
Vimu2g02470 536 SMART TAF_cls 2 68 IPR004823 -
Vimu2g02470 536 SUPERFAMILY ARM repeat 206 389 IPR016024 -
Vimu2g02470 536 Pfam TAF6 C-terminal HEAT repeat domain 260 347 IPR011442 GO:0006367
Vimu2g02470 536 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 2 532 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Vimu2g02470 536 FunFam transcription initiation factor TFIID subunit 6 1 66 - -
Vimu2g02470 536 CDD TAF6C 166 382 IPR011442 GO:0006367
Vimu2g02470 536 Gene3D Histone, subunit A 1 66 IPR009072 GO:0046982
Vimu2g02470 536 FunFam transcription initiation factor TFIID subunit 6 165 370 - -
Vimu2g02470 536 SUPERFAMILY Histone-fold 1 65 IPR009072 GO:0046982
Vimu2g02470 536 Gene3D - 165 370 IPR046344 GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02470 Vimu-Chr2 20427231 20431911 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02470 K03131 - gmx:100799998 954.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02470 2 20427231 20431911 Vimu2g02470 2 20427231 20431911 ECH