Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02459 ATGGTGACAGAGGAACAAATATCGGAAGCGGTGTCGTCGCTGCTGCGCGAATCGAACCCTAGCAAGCGTAGCTTCACGACGCTGAACCAGGTGGTGGAGGAGCTTCAGGCCAAGCTCGGCCACGACCTCTCTCACAAGCTCGATTTCATCACTGCGCAGATCAACCTCCTTTTCGGATCCCAACCACAACCACCACAACCTCCGCCGCAAAATGCGCAGAGGCAGATACAGCAGCAGAAAGACCGTTTCGCCCCTCCACCAAACCCTAATTTCCACTCTGTTCCTGTCAGTTCCGACTTCCAGGCTACCAAATTCCTTTCTTCTAACGCTGTCGTCGCCACTCCTGCTGATATTTCGCGCGTTGAAGTTCCTTCTCCTGTTCCTGCCTCTGCCCCTACTCCTGCTCCTGTTAACGATGCTCCGAAGGAAAGTACTCAAACAAAGGTCAAGAGAAGAGGTGGCCCAGGAGGTCTCACCAAACTTTGTGGTGTATCACCTGAACTTCAGGTCATTGTTGGCCAGCCAGCACTGTCGAGGACTGAGATTGTCAAGCAACTGTGGGCTTACATAAGGAAAAACAATCTTCAAGATCCCAGCAACAAAAGGAAAATAATTTGCAATGAAGAGCTGCGTGTGGTGTTTGAGACTGATTGTACTGATATGTTCAAGATGAACAAGTTGCTAGCTAAACACATTATCCCCCTTGAACCAACCAAAAAGCCTGTTCCAAAGAAGCAGAAGGTAGATGTGGACTCAGGAAAAAGAATTACTGAACCTACACCCTCTGTAATAATATCTGATGCACTGGCTAACTTTTTTGGGATCACTGAAAGGGAGATGCTACAGTCTGAAGTTCTGAGACGTATCTGGGAGTACATAAAAGTCAACAGGCTAGAGGTAAACAATGAAGAGATAAAATATGCACCAACTTTGTGCATTGACATCGATGCATTAAAGTTTAATATGATGATGGATCCTATGAATCCTATGGCAATACTGTGTGATGCGAAGCTTCAGGAGATCTTTGGCTGTGAAAGCATTTCAGCATTGGGGATACCTGAAGTTCTGGGCCGTCATCATATTTTTAGGAGTTCATGA 1098 0.4672 MVTEEQISEAVSSLLRESNPSKRSFTTLNQVVEELQAKLGHDLSHKLDFITAQINLLFGSQPQPPQPPPQNAQRQIQQQKDRFAPPPNPNFHSVPVSSDFQATKFLSSNAVVATPADISRVEVPSPVPASAPTPAPVNDAPKESTQTKVKRRGGPGGLTKLCGVSPELQVIVGQPALSRTEIVKQLWAYIRKNNLQDPSNKRKIICNEELRVVFETDCTDMFKMNKLLAKHIIPLEPTKKPVPKKQKVDVDSGKRITEPTPSVIISDALANFFGITEREMLQSEVLRRIWEYIKVNRLEVNNEEIKYAPTLCIDIDALKFNMMMDPMNPMAILCDAKLQEIFGCESISALGIPEVLGRHHIFRSS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02459 365 Gene3D - 1 58 - -
Vimu2g02459 365 SUPERFAMILY SWIB/MDM2 domain 151 237 IPR036885 -
Vimu2g02459 365 ProSiteProfiles SWIB/MDM2 domain profile. 157 234 IPR003121 -
Vimu2g02459 365 MobiDBLite consensus disorder prediction 123 158 - -
Vimu2g02459 365 CDD SWIB-MDM2_like 162 232 - -
Vimu2g02459 365 SMART swib_2 259 365 IPR019835 -
Vimu2g02459 365 SMART swib_2 158 237 IPR019835 -
Vimu2g02459 365 CDD SWIB_like 265 359 - -
Vimu2g02459 365 Gene3D SWIB/MDM2 domain 256 365 IPR036885 -
Vimu2g02459 365 Gene3D SWIB/MDM2 domain 153 241 IPR036885 -
Vimu2g02459 365 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 59 IPR014876 -
Vimu2g02459 365 MobiDBLite consensus disorder prediction 58 96 - -
Vimu2g02459 365 Pfam DEK C terminal domain 2 58 IPR014876 -
Vimu2g02459 365 Pfam SWIB/MDM2 domain 264 302 IPR003121 -
Vimu2g02459 365 Pfam SWIB/MDM2 domain 319 359 IPR003121 -
Vimu2g02459 365 Pfam SWIB/MDM2 domain 162 232 IPR003121 -
Vimu2g02459 365 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 243 359 - -
Vimu2g02459 365 SUPERFAMILY SWIB/MDM2 domain 258 360 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02459 Vimu-Chr2 20348002 20351077 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vimu2g02459 SWIB 8.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02459 - - gmx:100801960 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02459 2 20348002 20351077 Vimu2g02459 2 20348002 20351077 ECH