Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02430 ATGGCAACAAACCAGATCCTGAGAGAACTACAATGGGCTCAGCAAGCCATCAAATCGGACGGCCTAAATCTGCACAGTATTTCCTTCTACCTCTCTCAACCAACTTCAGGTTGTTATCAAGAAACAGACAACTCCATAAGCATAAACATTTCCAAGGAAAACCTTCCATTCTTTTCCCCTCTCTTGACTACTCTTGCAGCACCTGGGAGACACAACTCCTCCTTGAGAAACTTGGAGTTCCACAGAGTTGAATGGGACTCACAACAGGTAAGACATCTTGGCACCTTGCTGGGGAATAACCAAAATGTACAGCATTTGGATTTCAGAAGAAACAGATTCAATGGAAAAAGCCTATCAGACCTTTCTGACATTCTGAAGGCAAATAAAGTGATCAAAGAGATCATGCTTTCAGAATCAGGCATAGGGTCTGTTGGAGCTGGACTGATTGCTTCTGCTCTTATGGTAAATGACAGTTTGGAGGAGCTTCAGATATGGGAAGACTCAATAGGGTCAAGAGGTGCTGAGGAGCTTTCGAAGATGATTGAAGTTAACTCAACTCTTAAACTGTTGACAATTTTTGACTCAAATGCCATCACAGCTACACCTCTTATATCTGCAGTTTTGGCAAGGAACAGAAGAATGGAAGTTCATGTTTGGAGTGGGGAGAATAGAGAAAAGAGTTCCAAGATAGTTGAGTTTGAACCTGAGAACGGCACAGTTAGAATTTACAAGCTTAACCTCTCAGGGACTTGTAGAGTTACCTGCTCTTTAGGCATGAACTTCACTGTGAAGTCCCTTGACATGACAGGAGTAAGGCTAAAATCCCGGTGTGCCAAGGAATTTAGGTTGGTTTTGGAACAAAACCAGACCCTCAAAGAGGTAAATTTGTCTAGAACATACCTTAAAGACAAGGGCATTGTGTATATTGCAGCAGGTCTCTTCAAGAACAAAACTCTGCAAACTTTACACCTGAGTGGAAATTGGTTCAGTGGAATGGGTGTGGAACATCTATTATGCCCTTTGAGTAGATTTTCAGCACTTCAAAGGCAAGCCAACATTACTTTGACATGTATTACTTTTGGAGGAGAAAGAACAAGAATAGGAAGGGATGGGCTAGCTGCTGTTATACAGTTTCTTACAACAAATGAAACAGTGCGCAAGTTGGGAATTCATGATGATGAGAGCTTGAGATCAGATGACTTTGTTAAAATCTTCAAGAATTTGGAGAAGAATGCTAGCTTGAAATGCTTGTCTCTTCAAGGATGCAAACGTGTGGAGGGAGAGATACTGCTGCAGACAATTGTGGAGACACTCCAGATAAATCCATGGATTGAAGATATTGATCTCTCCAGAACACCTTTACAAAACTCTGGAAAGACCCAGCGAATTTATCAGAGATTAGGCCAGAATGAAAAGACTGAACCAGATATGGATTCTGTCAAGGATATGCCTTTAACAGAACCCAAGAGTTGCAGAGTTTTCTTTTGTGGCCAAGAATGTGCAGGCAAAACCTCACTTTGTCATTCAATATCACAAAATTTCTCTGCTTCGTCGCTTCCCTACTTGGACCAAGTCAGAACAATAGTGAACCCAGTGGAGCAGGCACTCAAATCAGTAGGAATGAAGATAAAAACTTTCAAGGATGAGGATACAAGGATTTCAATATGGAACCTTGCTGGTCATCACGAGTTTTTATCTCTCCATGATCTTATGTTCCCAGGGCATGGGAGTGCATCATTTTTCATCATCATATCAAGTTTATTCAGGAAACCAAGTAACAAAGAACCAAAAAGCTCAACAGAAATTGAAGAGGACCTGCAGTATTGGCTCAGGTTCATTGTTTCCAACTCTAAAAGAGCAATACAACAATGCATGCTACCAAGTGTTGCTGTTGTTCTCACACACTCTGACAAAATCAACCAACCATCACAAATTTTGCTGCTCACAGTAGAGTCAATTCAGAGACTTAGAGACAAGTTTCAAGGCTTTGTTGATTTTTACCCAACTGTATTCACAGTTGATGCAAGATCATCAGCATCAGTTAGTAAACTCACTCATCATATCCGAAAGACGAGCAAGACAATTCTTCAAAGAGTGCCACAGGTCTATCAACTTTGCAATGATCTGATACAGATTTTATCAGACTGGAGATCTGAGAACTACAACAAGCCAGCCATGAAGTGGAAGGAATTTGGTGAGCTATGCCAAGTGAAAGTTCCACTTTTGAGAATTCGATCAAGACATGACAACAAAGAGAAGGTAGAGATGAAGAGAAGAGCTATTGCTACATGTCTTCATCACATTGGTGAGGTGATTTATTTTGATGAGTTGGATTTTCTAATCTTAGATTTTGAGTGGTTCTGTAGCGAAGTCCTTGATCAGCTCATAAAGTTGAATGTTAAGAAGCAACACTCTGAAAACAATGGATTTATTAGCAGGAAGGAATTAGAAAAAATCTTAAGAGGAAGTTTGCAGAGCCCTATTCCTGGTATGGGTTCAAAGGTGTTTGAGAATTTAGACGCTAGTGATCTTGTAAGGATGATGCTAAAACTTGAACTTTGTTATGAGGAAGATCCATCAGATCCAAATTCCCTGCTATTGATTCCTTCCATTCTTGAAGAAGGCAGAGGAAAGCCTCAGAGGTGGCAGCTAAGCATGCCAGACTGCATTTACACAGGACGTCATCTTGAGTGTGATGATTCAAGCCACATGTTTCTAACTCCAGGTTTCTTCCCTCGTTTGCAGGCAAGAGTTGCTCTACCACACCTTTTTTCCTAA 2778 0.4082 MATNQILRELQWAQQAIKSDGLNLHSISFYLSQPTSGCYQETDNSISINISKENLPFFSPLLTTLAAPGRHNSSLRNLEFHRVEWDSQQVRHLGTLLGNNQNVQHLDFRRNRFNGKSLSDLSDILKANKVIKEIMLSESGIGSVGAGLIASALMVNDSLEELQIWEDSIGSRGAEELSKMIEVNSTLKLLTIFDSNAITATPLISAVLARNRRMEVHVWSGENREKSSKIVEFEPENGTVRIYKLNLSGTCRVTCSLGMNFTVKSLDMTGVRLKSRCAKEFRLVLEQNQTLKEVNLSRTYLKDKGIVYIAAGLFKNKTLQTLHLSGNWFSGMGVEHLLCPLSRFSALQRQANITLTCITFGGERTRIGRDGLAAVIQFLTTNETVRKLGIHDDESLRSDDFVKIFKNLEKNASLKCLSLQGCKRVEGEILLQTIVETLQINPWIEDIDLSRTPLQNSGKTQRIYQRLGQNEKTEPDMDSVKDMPLTEPKSCRVFFCGQECAGKTSLCHSISQNFSASSLPYLDQVRTIVNPVEQALKSVGMKIKTFKDEDTRISIWNLAGHHEFLSLHDLMFPGHGSASFFIIISSLFRKPSNKEPKSSTEIEEDLQYWLRFIVSNSKRAIQQCMLPSVAVVLTHSDKINQPSQILLLTVESIQRLRDKFQGFVDFYPTVFTVDARSSASVSKLTHHIRKTSKTILQRVPQVYQLCNDLIQILSDWRSENYNKPAMKWKEFGELCQVKVPLLRIRSRHDNKEKVEMKRRAIATCLHHIGEVIYFDELDFLILDFEWFCSEVLDQLIKLNVKKQHSENNGFISRKELEKILRGSLQSPIPGMGSKVFENLDASDLVRMMLKLELCYEEDPSDPNSLLLIPSILEEGRGKPQRWQLSMPDCIYTGRHLECDDSSHMFLTPGFFPRLQARVALPHLFS 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02430 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 691 IPR027417 -
Vimu2g02430 925 Pfam Leucine Rich repeat 287 310 IPR001611 GO:0005515
Vimu2g02430 925 Pfam Leucine Rich repeat 315 337 IPR001611 GO:0005515
Vimu2g02430 925 SMART LRR_RI_2 128 155 - -
Vimu2g02430 925 SMART LRR_RI_2 156 183 - -
Vimu2g02430 925 SMART LRR_RI_2 316 343 - -
Vimu2g02430 925 SMART LRR_RI_2 288 315 - -
Vimu2g02430 925 Pfam C-terminal of Roc, COR, domain 754 917 IPR032171 -
Vimu2g02430 925 PANTHER PROTEIN TORNADO 1 1 918 - -
Vimu2g02430 925 SUPERFAMILY RNI-like 11 469 - -
Vimu2g02430 925 Gene3D Ribonuclease Inhibitor 229 347 IPR032675 -
Vimu2g02430 925 Gene3D - 490 694 IPR027417 -
Vimu2g02430 925 Gene3D Ribonuclease Inhibitor 348 478 IPR032675 -
Vimu2g02430 925 Gene3D Ribonuclease Inhibitor 50 219 IPR032675 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02430 - - gmx:100784182 1647.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02430 2 20054321 20063097 Vimu2g02430 2 20054321 20063097 ECH