Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02401 ATGAACGTGGGCGACCTCAACAAGGTATGGGAAATCAGAGCTCTAAAGAGGAAACCCGCGACAGAAGAAGCGACGAAGATGTTGGAGAAGATCGCCAAACAGGTCCAACCCATCATGCGCAAACACAAATGGAGGGTCAAGCTTCTCTCTGAATTTTGCCCAGGAAATTCATCTCTCCTGGGGTTGAATGTTGGGGCTGGTATACATGTGAAGTTGCGGTTACGGAGGCCGAACAGGGATTTGGACTTCTACCCTTTTAATGAAGTTCTTGATACGATGCTTCATGAGCTTTGCCATAATGCCCATGGCCCTCATAATGCCAACTTCTACAAGCTTTGGGATGAGCTTAGGAAGGAATGTGAAGAGTTGATGGCTAAGGGAATAACTGGCGCAGGGCAGGGGTTTGACCTTCCAGGAAGGCGTTTAGGTGGTTATTCCCGGCAACCTCCACTTCCATTCCTCCGTAAAGCTGCTCTGGAAGCTGCAGAAAAGAGATCACGATTGGGATCTCTTCTTCCATCTGGACCAAAACGTATTGGTGGTGATAGTATTATAATGAAAGCCCTTAGTCCAGCACAAGCTGCTGCAATGGCTGCAGAACAGAGATTGCAGGATGAAATATGGTGTGGTTCTCAATCTTCCGCACATTTGGATCAGGAAGATGTTGATTATGATGATGCTGAGAACATTGTGCATAAGGGGGAAAATGTGGGAACCTCAAGACTAACAGACAATTCTACACTACCATCAAAGCTGTTATCTCGAAAAAGAAGTCAGGATACCTCTTCAAGTTTACTTGTTGGCTCATCATCTAGTAGTTCTGAATTAATAGATTTGACTATGGACACACCAAAAATGGGATCTAAGCGAAGATGCTGTGGGTCTGAAACCATTTCACATTCTCAATCCAATTTTCATGAAGGACCTAGTTCAGCAAATTTATCAAGTGTGTCCGTATCTGGTGATAGTAGAACATTTCGTTCTGATGAATCTGGAATGTGGGAATGTACGATGTGCACTCTATTGAACAATAAATTGGCTCCCATTTGTGAGTTGTGCGGCACTCACCAGCCAAAAGATGTTGGTACCAAGTACAACACTTGGTCTTGCAAATTCTGTACCTTGGAGAACAGTGTGAAGTTGGATAAGTGCACTGCCTGTGATCAATGGAGATACTCTCGTGGTCCACCAGTGTCAACCCTGGCACCTAACGTTGGTACATAG 1224 0.4485 MNVGDLNKVWEIRALKRKPATEEATKMLEKIAKQVQPIMRKHKWRVKLLSEFCPGNSSLLGLNVGAGIHVKLRLRRPNRDLDFYPFNEVLDTMLHELCHNAHGPHNANFYKLWDELRKECEELMAKGITGAGQGFDLPGRRLGGYSRQPPLPFLRKAALEAAEKRSRLGSLLPSGPKRIGGDSIIMKALSPAQAAAMAAEQRLQDEIWCGSQSSAHLDQEDVDYDDAENIVHKGENVGTSRLTDNSTLPSKLLSRKRSQDTSSSLLVGSSSSSSELIDLTMDTPKMGSKRRCCGSETISHSQSNFHEGPSSANLSSVSVSGDSRTFRSDESGMWECTMCTLLNNKLAPICELCGTHQPKDVGTKYNTWSCKFCTLENSVKLDKCTACDQWRYSRGPPVSTLAPNVGT 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02401 407 SUPERFAMILY Ran binding protein zinc finger-like 329 357 IPR036443 -
Vimu2g02401 407 ProSitePatterns Zinc finger RanBP2-type signature. 368 387 IPR001876 -
Vimu2g02401 407 Gene3D - 328 365 - -
Vimu2g02401 407 MobiDBLite consensus disorder prediction 236 256 - -
Vimu2g02401 407 ProSiteProfiles Zinc finger RanBP2 type profile. 330 359 IPR001876 -
Vimu2g02401 407 ProSitePatterns Zinc finger RanBP2-type signature. 334 353 IPR001876 -
Vimu2g02401 407 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 1 407 - -
Vimu2g02401 407 MobiDBLite consensus disorder prediction 235 256 - -
Vimu2g02401 407 ProSiteProfiles Zinc finger RanBP2 type profile. 364 393 IPR001876 -
Vimu2g02401 407 Pfam WLM domain 8 203 IPR013536 -
Vimu2g02401 407 ProSiteProfiles WLM domain profile. 1 204 IPR013536 -
Vimu2g02401 407 SMART zf_4 332 356 IPR001876 -
Vimu2g02401 407 SMART zf_4 366 390 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02401 Vimu-Chr2 19611506 19615405 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02401 K22685 - gmx:100795976 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02401 2 19611506 19615405 Vimu2g02401 2 19611506 19615405 ECH