Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02375 ATGGACGAAGGCGAAGGAGGGTACGGTGAGAGCGCCGATCCCATGGATCAGTTCCACCGTAACGAAGCTATATCTGCTGTCGCTGACGATGGTTTCTTGGCCGAGGAAGATGACGATTATGAGGATCTATATAACGACGTCAACGTCGGCGAAGGCTTCCTTCAATCTTTGCGCAAAAATGATGATTCTGGGTTCCGAAATGAGGATGTCGAGGATAAGAAGCCACTGCCTCCGCCGCCTGTTCTGGATGCTGCTGGGGTTTCGATTCCAGGTGTCGGTGCCGGTGGAGAGGGAGCCGGCGCAGGTGGAAGCGGGGTTGCGGAGTCTAGGGCTTCTGGACGAGTTGATGGTTTTCAGAATCAAGGGTTTAAAGTGAACGATGTTGGTGCCAAAGGTGGAATTAGGGTTGAATTAGGGCACCAATCTGATAAATTGAGTGAAATTGAAGAGCAGGGTGGTAATGATGGTGCTGCAGTGCAGGGGATCGGACAACAACCACATGCTGGAGTTGTTGGAAGTGTGGGAAATGAGGGTATGGTGAGACAAGGTCAAGGTGGTGGTAGTGTTGGTGGTGGAGGAGGAGGAGGAGGGAATGCTAATAGGGTTGGTGGGAATGGTGTTGGGAACAGTGTGGGTGCTGTTAATAGTGTTAATACTGGAGGAGTTGTAGGTGGTGGTGGTGGTGGTGGTTCTGGTGGTACTATATTGTTTGTCGGTGATTTGCATTGGTGGACCACTGATGCCGAACTGGAAACTGAGCTTAGTAAGTATGGACCTGTTAAGGAGGTGAAGTTTTTCGATGAGAAGGCTAGTGGAAAGTCAAAGGGGTATTGTCAAGTTGAGTTTTTTGACCCTTCTGCTGCAACAAATTGCAAGGAGGGAATGAATGGTCATGTTTTTAACGGGAGACCATGCGTTGTTGCGTTTGCATCTCCTTTTACAGTTAAGAAAATGGGGGAGGCACAGATTAACAGGAATCAGCAGATGAACCCATCTGCAGTTACACAACAGGGAAGGAGGGGGCCTTCTGATTCAGGGGCTAAGCCTAGTGGGGGTAATATTTCTACCGGTGGTAATTACCAAGGAGGAGACGGGAATAGAGGTTATGGGAGAGGAGGTAATTGGGGAAGAGGGAACAATCCTGGTATGGGGAATAGGGGGCCCGTGAATGCGATGAGGAATAGGGGTGGTGGGATGGGTGGTAGAGGTATAATGGGTCATGGTGGAAATGGTTTTGGACAGGGTATTGGTGGTACCCCTCCACTGTTGCATCCTCAGTCAATGATGAGTCAGGGTTTTGATCCTGCTTTTGGTGGTCCAATGGGTAGAATGGGTAGCTACGGTGGCTTTCCTGGTGCTCCGACGCCTCCATTTTCTGGGATCTTACCATCATTCCCTGGTGTTGGAGGTGTTGGTTTGCCTGGAGTGGCACCTCATGTTAATCCTGCATTCTTTGGAAGAGGGATGCCAGTTAATGGTATGGGGATGATGCCTACATCAGGCATGGATGGTCCTAATATGGGAATGTGGTCAGATCCAAATATGGGTGGGTGGGGTGGTGAAGAACCTGGTGGTGGGAAGGCTGGAGAGTCAAGTTATGGGGAGGAAGCTGCATCTGACCATCAGTATGGTGAAGTGAGTCATGATAGAGCTGGGTGGCCTATGAGGGAGAAAGATAGAGGTTCAGAAAGAGACTGGTCTGGTTCTTCTGAGAGAAGGTATAGGGATGATAGAGATCAAGGATATGAGAGAGATGCACCTAGAGAGAAAGATATGGGCCATGATCCTGAGTGGTCTGAAAGAAGACATCGTGATGATAGAGAAACTGGCCGAGAACGGTCCCGTGATCGTGACAGGGAAAGGTCTCGTGACCGTGATCGTGAACGTTCTCGAGATCGTGACCGCGACCGGGAAAGGGATCACCGTGAGCGTGACAGACACAGAGAAGACAGGGACAGGTATGCAGATCATCATAGGTATAGAGATGGGGAAGGAGAGCATGATGACGAGTGGGAAAGGGGACGGTCATCAAGGACACACAGCAAATCCCGGTTATCACAAGAGGAGGAACACCACTCTAGGCCGAGAGATGCTGATTATGGGAAGAGGAGACGGCTTACATCTGAATAA 2130 0.5009 MDEGEGGYGESADPMDQFHRNEAISAVADDGFLAEEDDDYEDLYNDVNVGEGFLQSLRKNDDSGFRNEDVEDKKPLPPPPVLDAAGVSIPGVGAGGEGAGAGGSGVAESRASGRVDGFQNQGFKVNDVGAKGGIRVELGHQSDKLSEIEEQGGNDGAAVQGIGQQPHAGVVGSVGNEGMVRQGQGGGSVGGGGGGGGNANRVGGNGVGNSVGAVNSVNTGGVVGGGGGGGSGGTILFVGDLHWWTTDAELETELSKYGPVKEVKFFDEKASGKSKGYCQVEFFDPSAATNCKEGMNGHVFNGRPCVVAFASPFTVKKMGEAQINRNQQMNPSAVTQQGRRGPSDSGAKPSGGNISTGGNYQGGDGNRGYGRGGNWGRGNNPGMGNRGPVNAMRNRGGGMGGRGIMGHGGNGFGQGIGGTPPLLHPQSMMSQGFDPAFGGPMGRMGSYGGFPGAPTPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPTSGMDGPNMGMWSDPNMGGWGGEEPGGGKAGESSYGEEAASDHQYGEVSHDRAGWPMREKDRGSERDWSGSSERRYRDDRDQGYERDAPREKDMGHDPEWSERRHRDDRETGRERSRDRDRERSRDRDRERSRDRDRDRERDHRERDRHREDRDRYADHHRYRDGEGEHDDEWERGRSSRTHSKSRLSQEEEHHSRPRDADYGKRRRLTSE 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02375 709 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 20 645 IPR034772 -
Vimu2g02375 709 MobiDBLite consensus disorder prediction 503 709 - -
Vimu2g02375 709 MobiDBLite consensus disorder prediction 324 397 - -
Vimu2g02375 709 SMART rrm1_1 235 308 IPR000504 GO:0003723
Vimu2g02375 709 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 305 IPR000504 GO:0003723
Vimu2g02375 709 MobiDBLite consensus disorder prediction 324 362 - -
Vimu2g02375 709 MobiDBLite consensus disorder prediction 61 76 - -
Vimu2g02375 709 MobiDBLite consensus disorder prediction 55 108 - -
Vimu2g02375 709 MobiDBLite consensus disorder prediction 541 709 - -
Vimu2g02375 709 CDD RRM_CFIm68_CFIm59 236 309 - -
Vimu2g02375 709 Gene3D - 229 374 IPR012677 -
Vimu2g02375 709 SUPERFAMILY RNA-binding domain, RBD 232 319 IPR035979 GO:0003676
Vimu2g02375 709 MobiDBLite consensus disorder prediction 1 23 - -
Vimu2g02375 709 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 312 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02375 Vimu-Chr2 19304547 19306676 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02375 K14398 - gmx:100782869 932.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02375 2 19304547 19306676 Vimu2g02375 2 19304547 19306676 ECH