Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02362 ATGAAGCCACACAAACTTCCCTCTCCGTCACTCTCACGTGCGCTTGCACGTGCCCTATCCCCCGCCATCCCCGCCACCCCCGCCACCCCCACCATCCCCACGCAATGCGATTTGGCATTTCCTTTGAAGACGGTGACCACCGCAAACTTCGAACCATCGCTGGCGGAGCTCCGTCGCCACGTCCGAACGTCGAATTTCGTGGCCATCGACCTCGAGATGAGCGGCATCACCAGCGCTCCCTGGCGCGAGTCCTTCGACTTTGACCGCTCCGACGTGCGCTACCTCAAAGTCCGAGACTCCGCCACCAAGTTCGCCGTCCTTCAATTCGGCGTTTGCCCCTTCCGTTGGGATTCCTCTAATCACTCCTTCGTCGCGTATCCGCACAGTTTCTATGTTTTTCCTCGACAGGAGCATGCAGGTCTGGGTCCGTGCGATGAATTTCTCTGGCAGACTACTTCAATGGATTTCTTGGCTAAATACCAGTTTGATTTTAATGCTTGCATACACGAAGGAATATCTTATTTATCCAGAGAACAAGAAAGGGAAGCGTTAAGGAATTTGAATTCTGCACTTGACAGTGAGTGGTCAGACATTTGTAAATTAAAAGATGTCAGGGACATGCCGTTGCACAGTGCATCAGACATTTTGTTCACTGCACGAATGAAAAACAAATTCCGTGGATGGCGCGATGGGTTATTACATGAGCAAAATCTAGAAGACCAAATTCAAGGAATTACAGAAGACTCAAAATTTCAAGAGATATTTTTTGAGATGCATCCAGCTCTTAGGCTTAATGGATTCACCTCTCACCAGCTTAAATTGATTCATTTGGTAATCAGAAAACACTTCAATGATCTTTATTATATCAGTGTGAACAGTGAGGCTTCTGGTTTACAGCATTTAGTTGTGTATACAGACTCAAAGGATGAATTAAATTTACTTCTGAAAAAAGTGAAAGAAGAAAATCATGGGGCAGAAAAGATGAAAATTGAAGCTGCTGTGGGACTTCGCCATGTTATTGATCTCCTTTCATCGGAACAGAAGTTGATTGTTGGTCACAATTGTTTTCTAGATATTGCTCATGTCTACAGCAAATTTATAGGCCCTCTTCCTGGTACTCCTGAAGAGTTTGTTACCTCAGTTAACAAGTGCTTTCCACACATTGTTGACACCAAGATACTTCTGAACACTAATTTTATGCTCCAAGAAAAGATGAAAAGATCCAGAAAATCACTGGCAGCTGCATTCACTTCATTTTGCCCTCAAATTGCAGCTGGTTCAAGAACCAGTTATCTAGGTTCACTCTCACATGTGAAAGTGGACGTTGAAGTCGATGAAGTGAGATCATCCAGCTGGAACCCTGGAGGCAAGCATGAGGCAGGATATGATGCCTTCATGACTGGATGCATCTTTGCCCAGTTATGCAGCGATTTAGGTATTGATTACAAACTCCACGATTCTTCAAAACAATTAGCCGTTGACGAGAAACTGCAGAATTATATTAATCGTCTATATCTTAGTTGGATGCATGGGGACATTATTGATCTAACTACTGGTAATAAGGTTGCCGATTCTTCACCCAGTCATAGCCTCAGGAGGCGGTACCCAAAAATTTTGTTTGAGAACATTGTTATTATTTGGGGATTTCCTTCTGCGCTGAAGGCAAATGAAATAAGAATGTGCTTATCTAAAGTATTTGGTCCAACTTCTATAGTTTCTCTCTTCCACCTGGATGCAACTGCAGTATTCGTTCAGTTTAGTGAAACACAGCTAGTTTCTGATTTTCTATCATTGAAGAACACCTTAGAGAGAAGTGATGGTGCACTATTGGTTTTGCATCCACTGTCAAAACTTTTGGAAGGTGGAAATACATGTGCTGCTAATTATGGTACTTATAAAGAAATTTGTGGCTCACCCTTATCAGAATGCCTGTTTGCTGATCAGGCAAAGGCAGTTGGTATAAAGTGGAAGACCAAATTGCCAGAATACAAGGTAGTATTGGGGGCCGAAGAAGATGAAAATTCAAGTGTAAGAGGTAATGTAAATATTGCTATGGAGAATGTGGAAAGGACCAAGCCAAACAAAATTGATCAATTGCGAAATGCTCCATCTCGGAGACAAGTCTCCCCATATGGGGATGAAGATTCTTGTGTTGCAGAAGGCAACTTGTGA 2172 0.4323 MKPHKLPSPSLSRALARALSPAIPATPATPTIPTQCDLAFPLKTVTTANFEPSLAELRRHVRTSNFVAIDLEMSGITSAPWRESFDFDRSDVRYLKVRDSATKFAVLQFGVCPFRWDSSNHSFVAYPHSFYVFPRQEHAGLGPCDEFLWQTTSMDFLAKYQFDFNACIHEGISYLSREQEREALRNLNSALDSEWSDICKLKDVRDMPLHSASDILFTARMKNKFRGWRDGLLHEQNLEDQIQGITEDSKFQEIFFEMHPALRLNGFTSHQLKLIHLVIRKHFNDLYYISVNSEASGLQHLVVYTDSKDELNLLLKKVKEENHGAEKMKIEAAVGLRHVIDLLSSEQKLIVGHNCFLDIAHVYSKFIGPLPGTPEEFVTSVNKCFPHIVDTKILLNTNFMLQEKMKRSRKSLAAAFTSFCPQIAAGSRTSYLGSLSHVKVDVEVDEVRSSSWNPGGKHEAGYDAFMTGCIFAQLCSDLGIDYKLHDSSKQLAVDEKLQNYINRLYLSWMHGDIIDLTTGNKVADSSPSHSLRRRYPKILFENIVIIWGFPSALKANEIRMCLSKVFGPTSIVSLFHLDATAVFVQFSETQLVSDFLSLKNTLERSDGALLVLHPLSKLLEGGNTCAANYGTYKEICGSPLSECLFADQAKAVGIKWKTKLPEYKVVLGAEEDENSSVRGNVNIAMENVERTKPNKIDQLRNAPSRRQVSPYGDEDSCVAEGNL 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02362 723 Pfam CAF1 family ribonuclease 45 471 IPR006941 -
Vimu2g02362 723 Coils Coil 308 328 - -
Vimu2g02362 723 Gene3D - 44 204 IPR036397 GO:0003676
Vimu2g02362 723 MobiDBLite consensus disorder prediction 700 723 - -
Vimu2g02362 723 Gene3D - 307 520 IPR036397 GO:0003676
Vimu2g02362 723 SUPERFAMILY Ribonuclease H-like 43 483 IPR012337 -
Vimu2g02362 723 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 45 634 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02362 K01148 - gmx:100808217 1135.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02362 2 19170427 19174385 Vimu2g02362 2 19170427 19174385 ECH