Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02361 ATGGCGGCGGTGGAGCATTCTCCATTGTTTGAGACAAAGAGCGCCAAAGGAAGGGTCTTTTACAAGATCTTTTCTTTAACATTGTTTGTGGGGATTTGCTTCATCTGGGTTTTCAGAGTGAGTCACATACCCAGAGAAAGTGAAGTTGGGAAATGGGACACCCCTTCAGATGGAACCTTCTCTTCAGGGAACCTTTCAGACAAAGACTATCTCAAAGCAGATCCAGGAATTGAGCCACCAGTGATGGTTATTAACACAGTGCTATCAGTTATGGCTTATGAGTATCCACCAGACAAACTCAGTGTGTATCTTTCAGATGATGCTGGATCAGATATTACCTTCTATGCTCTCTTAGAGGCTTCCATCTTTGCAAAACAATGGCTTCCATTCTGCAGGAAATTCAAGGTAGACCCCACCTCACCAGCTGCTTATTTCAAAACCATTCACTCATCCACTCATGCCAAAGAGTTGGTCACCATCAAGCCAAGATGGGTAGAGTACCAGAAGAAGTACACTCAAAGCATAAAGGATTTTCACAGTGGGATTCATATTCTTCTCGAAGAGACCATGACACAATTCTTCAATGCCAAAGATGTAGATGGGAATGTTATGCCCCTATTGGTATATTTGGCTCGTGAGAAGAGACCTCAAGTTGCACATAACTTCAAAGCTGGAGCCATGAATTCATTGATAAGAGTGTCATCATTGATTAGCAACGGGGAAATTATCCTTAATGTAGATTGTGACATGTACTCAAACAATTCTCAATCTCTAAGGGATGCACTCTGCTTCCTCATGGATGAAGATAAGGGCCATGAGATTGCTTATGTGCAGACTCCACAGTGTTTTGAGAATATCACCAAGAATGATCTGTATGGTGGTGCTCTACGAGTAGATTATGAGGTGGAATTCCATGGTATGGATTCCCTTGGTGGGCCTTTGTATGCTGGAACTGGCTGCTTTCACAGAAGAGAGATACTGTGTGGAAGAAAGTTCAGTGACCAATACAAGAAAGATTGGAATGAATACAAGAATATTGGTGATATGACAGAAGTAAGCTTGCATGAACTGGAAGAACAATCAAAGGCTCTTTCTAGTTGTACCTTTGAGATAAACACTTTATGGGGAAAAGAGGTGGGACTGCTATATGGTTGCTCATTAGAGGATGTTATGACAGGTTTGTCTATTAAATGCAGAGGATGGAAATCAGTGTTCTATAATCCTCAAAGGAGAGCTTTCTTAGGTGTAGCTCCAAACACCTTGCCACAAACACTAGTTCAACATAAGAGATGGTCTGAAGGATGCTTTCAAATTTTGCTTTCCAAGCATAGTCCTGCATGGCATGCTTATGGATTAATCAGTCCTGGCCTCCAAATGGCATATTGTTACTATAACCTATGGGCGTTTATTTGCTGGCCAACACTATATTACTGCGTCATCCCTTCACTCTATCTCCTTAAAGGGATTCCCTTGTTTCCACAGTCCATGGTTCATCCTTTTGCATATGTGATTCTTGGTGATTCCTCTTATTGTATGATGGAGTTTTTGTGGTTAAAAGGCACAGTAAAGGGTTGGTGGAATGAGCTACGGATATGGCTGTACAAGAGAACAAGCTCATACCTCTTTGCTTTTGTTGATACCATCTTGAAGTCTTTTGGCTTTTCAGAATCAACATTTGTAGTATCTGCAAAGGTAGCAGAAGAAGAAGTTTCCCAACGATATGAGAAAGAGATCATGGAGTTTGGAAACTCATCCCCAATGCTCACTGTGCTAGCAACACTTGCATTGCTCAATTTGTTTTGCCTTCTTGGCATGTTCCTAAAGCAAGTGTTCATCAGTGAAGGGGGTCTCAGAATTTTTGATGCAATGGCATTGCAAGTTCTTCTAAGTGGGGTTTTGGTTCTCATCAATGTACCTGTGTACCAAGGACTCTTCCTAAGAAAAGATGAGGGAAGATTACCAATGTCTGTTGCAGCAAAATCTACAGCATTGGCTCTAAAAGTTGCTATGATGAATGTGAAAACCATGGAAATCAAAGGAGTAGTTTATGATATCAAATCATGTACCTTTTCAAAAAGTAATGGATCAGGGTCATGTACTGCAAGAAATGTTAAGGAAAATTACGATGCAAAGAAAGTAGTGATAGAGATGAAGGTAGCGCTATCAAATTTTGCCACTGCAATGGTAATCTTTTCCAGCATGAATGCAGTGCTTGGGATCAGATTTGTGATTGACAGACGTGAATGTTTCTCTCACAATGTTGAGCACGAAGCGGATAGAGTTCATGCTTCATTTGTTGTCATCAAGATTGATGCATCTTGGCAATATACTGATGATGGTGTAGACCTTGAGGTGAGGGGACCTGCTGGTGAACCAGTTCGAGATTTTCTCGACGTGACAAGTGAAATATTCGACTTTGTGGCTCGAAGCACTGGACCCTATCGCTTCTGCTTCAACAACAGGTCTCCCTATCATGAAACGATTGATTTTGATGTCCACAGTAACCACGTTGAGTTTTCTGATCATCATGCAAAAGATGGTGAGGCATACATGTACTGA 2559 0.4131 MAAVEHSPLFETKSAKGRVFYKIFSLTLFVGICFIWVFRVSHIPRESEVGKWDTPSDGTFSSGNLSDKDYLKADPGIEPPVMVINTVLSVMAYEYPPDKLSVYLSDDAGSDITFYALLEASIFAKQWLPFCRKFKVDPTSPAAYFKTIHSSTHAKELVTIKPRWVEYQKKYTQSIKDFHSGIHILLEETMTQFFNAKDVDGNVMPLLVYLAREKRPQVAHNFKAGAMNSLIRVSSLISNGEIILNVDCDMYSNNSQSLRDALCFLMDEDKGHEIAYVQTPQCFENITKNDLYGGALRVDYEVEFHGMDSLGGPLYAGTGCFHRREILCGRKFSDQYKKDWNEYKNIGDMTEVSLHELEEQSKALSSCTFEINTLWGKEVGLLYGCSLEDVMTGLSIKCRGWKSVFYNPQRRAFLGVAPNTLPQTLVQHKRWSEGCFQILLSKHSPAWHAYGLISPGLQMAYCYYNLWAFICWPTLYYCVIPSLYLLKGIPLFPQSMVHPFAYVILGDSSYCMMEFLWLKGTVKGWWNELRIWLYKRTSSYLFAFVDTILKSFGFSESTFVVSAKVAEEEVSQRYEKEIMEFGNSSPMLTVLATLALLNLFCLLGMFLKQVFISEGGLRIFDAMALQVLLSGVLVLINVPVYQGLFLRKDEGRLPMSVAAKSTALALKVAMMNVKTMEIKGVVYDIKSCTFSKSNGSGSCTARNVKENYDAKKVVIEMKVALSNFATAMVIFSSMNAVLGIRFVIDRRECFSHNVEHEADRVHASFVVIKIDASWQYTDDGVDLEVRGPAGEPVRDFLDVTSEIFDFVARSTGPYRFCFNNRSPYHETIDFDVHSNHVEFSDHHAKDGEAYMY 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02361 852 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 192 350 IPR029044 -
Vimu2g02361 852 SUPERFAMILY Nucleotide-diphospho-sugar transferases 83 498 IPR029044 -
Vimu2g02361 852 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 73 661 - -
Vimu2g02361 852 Pfam emp24/gp25L/p24 family/GOLD 746 839 IPR009038 -
Vimu2g02361 852 Pfam Cellulose synthase 73 155 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu2g02361 852 Pfam Cellulose synthase 189 338 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu2g02361 852 Pfam Cellulose synthase 362 675 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu2g02361 852 ProSiteProfiles GOLD domain profile. 747 834 IPR009038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02361 Vimu-Chr2 19148823 19155026 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02361 5 666 Glycosyltransferase AT1G55850 48.892 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02361 - - gmx:100785532 994.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02361 2 19148823 19155026 Vimu2g02361 2 19148823 19155026 ECH