Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02320 ATGATGGCTTCCCCAAACAACCACCACTCCAACCCCAACGCCCACCCTTCTCCTCCTCCCTTCGACATGCACTCCTTCTTCAATCCTCCGCCTCCTTCGTCCAACCCTAACCCTAACCCTAACCCTATCCCTTCATCCCAATATCCTCCGCCCTTCCCCGCCGCCGCACCCTTCCCCTTTCCGGCCTTCGACCTCCCTCTCCACCACCACCGTTCCCTCTCCTTCCCCACGCAGCCCATCCCTCCGCCTTCCAACCCTAACGCCGGCGCTCGCCTCATGGCCCTCCTTAGCAACCCCTCCCCCCCGCCCCCTGACTTCGCGGCACCCTCCTCCTCCCCCTCTACCGTCCTCGCCGCCGCCACTGCCGCCGCCGCAGCCCTCACTCGGCTCCCCAGCGGCAAGGTCCCCAAGGGAAGGCATCTCTCCGGGGAGCGCGTATCCTACGACGTGGACGTCCGGCTGCCTGGCGAGGTCCAGCCGCAGCTGGAAGTTGCTCCGATCACGAAATATGGGTCGGATCCTAACCCCGTTTTGGGGAGGCAGATTGCGGTGAATAAGTCCTATATATGCTATGGGCTGAAACAGGGGAACATTAGGGTGCTTAACATCCACACTGCTGTCAGGTCTCTCCTCAGAGGCCATACTCAGAGGGTCACAGACTTGGCGTTTTTTGCTGAAGATGTTCATCTCTTGGCTAGTGTTGGCACAGATGGCCGTGTCTACGTGTGGAAGATCTCTGAAGGTCCAGATGATGAAGATAAGCTTCAAATTACAGCCAATATTGTTATTGCTATTCAAATAGTGGGGGAGGAGAAAGTTGAACATCCTCAAATTTGCTGGCACTGTCACAAACAAGAGATTTTGATAGTTGGTATGGGAAAACATGTTTTTAGAATTGACACCACAAAGGTTGGAAATGGTGAAGCGGTTGTGGCAGAGGATCCTCCTCTGAGATGTCCTGTTGACAAGCTCATTGATGGGGTTCAGCTGGTAGGCACACATGATGGAGAGGTGACTGATTTATCCATGTGCCAATGGATGACCAATCGATTGGTATCTGCGTCACAGGATGGCACGATAAAGATATGGGAAGATCGCAAGACACAGCCACTTGAAGTTTTGAGACCACATGAAGGACATCCAGTTTTTTCTGCTACATTTTTTACTGCTCCTCACCAGCCTGATCATATTGTTCTTATCACAGCTGGACCACAAAATAGGGAGGTGAAGCTGTGGGTATCAGCAAGTGAAGAAGGTTGGCTGCTCCCAAGTGACACTGAATCCTGGAAATGCACTCAGACGTTGGAGTTGAAGAGTTCAGCTCAACCATCTAGAGATGCTTTCTTTAATCAAGTTGCAGCATTGCCTCATGCAGGTCTACTTTTACTTGCAAATGCCCAGAGGAATGCTATATATGCTGTACATTTAGAATATGGTCCTAATCCAGAATCAACACGCATGGATTATATAGCTGAGTTTACTGTGACCATGCCCATTCTGAGTTTTACTGGGACAAGTGATATACTGCCTCATGGTGAGCATATAGTTCAGGTTTATTGTGTCCAGACACAGGCTATTCAGCAATATGCTTTGGATTTAGCCCAGTGCTTGCCTCCACCATTGGATAACGTGGGACTAGAGAAGTCAGATTCCATTGTTTCCGCTGATGCAATTACTGTTGAAGGATTCCACACTTTTGACTCTTCTGCTCCCAAAATAATGTTACAAGCAGGTAGTACTGAAAATGGACTTGTGCCTAGATACCCTTTAAGCTCTGGCCACGTTGAGGTGCCTATTACATCTTCGAACACTGAAGCTAAACCTGTTACATTAGCTCCTTCTAGTAGCGAACCTGATGTCATTTGTATTCCATCTCCACCTCTTCCTTTAAGCCCAAGGTTATCTAGGAAACTCTCTGATATCAGGAATCCACAGTCAAATTTGGGTGATCATGTTGGGGAACATCCTGTTAATGATTATTCTGTAGACAGACAAATGGATACCATTCACAGAAACCTCTCTGAGACATTTAATAGTGATTCAAAGAATGATGAAAAGAAAGTGAAGCAGGATCACATTTCTAGTGTACTTAATCCTTCTGTCATGTTTAAGCAACCAACCCATCTAATCACACCATCTGAGATCACAAAGGCTGGTTCCACCTCTGAGAATAATATAATTGATGGGAAGAGCGAGGGAGAAGGAAAGATGCAGGATGTGGGTAATGCTGAAGTGGAAGTGAAGGTGGTGGGTGAGACAAGATCTAATCAAATTGATGAATTTGGTCGAGGGTCACAACAAAATCCAGTTTCTGATAGTAAAGAAAAAATATTTTGTTCTCAGGCGTCAGATCTTGGTATTGAAATGGCTCGAGAAGGCTGTGTGATAACTGCTGGGGACACATACCTTACAGAGGAACCAGGGCAACTTGATTCAACAGGAGCAGTGTCACTAGCTCAACCTCCTGATTCTGGCGAGGATGGACTCCAAGATACGGCAAAAGATGCCCATGAAAAGGTTTCTGACTCATCTACATCTGTGGCTGTGCCACCATCTCCTGTGCCTAATGCAAAAGGGAAAAGACAGAAGGGTAAAAATTCTCAAGCATCAGGTCTATCTTTCTCATCTCCAAGTGTGTGTAATTCAACTGATTCATCCAGTGAACCAAATGGAAATTCTAGCCTTCCGTCTGCAGAAAATGCTTTCCCTCAAATTCTGGCAATGCAAGAATCACTCAATCAGTTATTGACAATGCAAAAAGAGATGCAAAAGCAAATGACAATGATTGTCGCTGTTCCAGTGACAAAAGAAGGTAGAAGGCTTGAGGCTGCCCTAGGGAGAAACATGGAAAAAGCTGTCAAGGCTAACAGTGATGCTTTATGGGCTAGAATCCAGGAGGAGAATGCAAAAAATGAAAAGTTGTTACGAGACCGTATCCAGCAAATTACAGGTCTGATTAGTAACTTTATGAATAAAGATCTACCGGCAATACTGGAGAAAACAGTAAAGAAGGAAATGGCCTCGGTTGGGCAAGCAGTAGTACGTGCAATGTCTCCTGCTGTGGAGAAAATAATATCTTCTGCTATTGTTGAATCCTTCCAGAGAGGAGTGGGTGATAAGGCAGTGAACCAACTTGATAAATCAGTTAGTTCAAAACTGGAAGCTACTGTAGCTAGGCAAATCCAAGCACAATTTCAGACAACTGGCAAACAGGTGCTTCAGGAGGCACTCAAATCCAGTTTTGAAACGTCAGCGGTTCCTGCCTTTGAAATGTCGTGTAAAGCCATGTTTGAGCAAGTGGATGCTACATTTCAGAAAGGCATGGCTGAACATTCAGCTGCTGTGCAGCAACGACTTGAATCTGCGCCCACTTCTTTGGCAATGACGCTTAGGGATTCCATTAATTCAGCATCATCAATTTCTCAAACTTTGAGTAGAGAAGTGCTCGAGGGCCATCGAAAGTTAGTAGCACTCGCAGCTACAAGAACAAACTCTGGCACGTTAAATCCTTTGCCGGTCCAGCTGAACAATGGTCCTTTACTTCGTGAAAAGGTTGAGGTTCCCCTGGATCCCACACAGGAGCTAGGAAGGTTGATTTCTGAACGGAAATTCGAGGATGCTTTCATTGGAGCCTTACATAGAAGTGATGTATCCATTGTATCATGGTTATGTTCTCAGGTTGATTTACATGGACTGTTGGCAATGGTTCCTCTTCCTTTAAGTCAAGGTGTACTGCTCTCACTTCTGCAGCAACTAGCCTGTGACATTAACAACGACACAACACGAAAGATCCAATGGTTAACAGATGTGGCGTCTGCCATAAACCCAGCGGACCCAGTGATTGCGATGCACACACGGCCCATCTTTGAGCAAGTCTACCAGATACTCAATCATCAACGTAGCTTGCCTTCAACGTCTCCAACTGATCTCTCAAGTATCCGTCTTTTATTGCATGTCGTCAACTCCATGCTTATGACATGTAAATGA 3987 0.464 MMASPNNHHSNPNAHPSPPPFDMHSFFNPPPPSSNPNPNPNPIPSSQYPPPFPAAAPFPFPAFDLPLHHHRSLSFPTQPIPPPSNPNAGARLMALLSNPSPPPPDFAAPSSSPSTVLAAATAAAAALTRLPSGKVPKGRHLSGERVSYDVDVRLPGEVQPQLEVAPITKYGSDPNPVLGRQIAVNKSYICYGLKQGNIRVLNIHTAVRSLLRGHTQRVTDLAFFAEDVHLLASVGTDGRVYVWKISEGPDDEDKLQITANIVIAIQIVGEEKVEHPQICWHCHKQEILIVGMGKHVFRIDTTKVGNGEAVVAEDPPLRCPVDKLIDGVQLVGTHDGEVTDLSMCQWMTNRLVSASQDGTIKIWEDRKTQPLEVLRPHEGHPVFSATFFTAPHQPDHIVLITAGPQNREVKLWVSASEEGWLLPSDTESWKCTQTLELKSSAQPSRDAFFNQVAALPHAGLLLLANAQRNAIYAVHLEYGPNPESTRMDYIAEFTVTMPILSFTGTSDILPHGEHIVQVYCVQTQAIQQYALDLAQCLPPPLDNVGLEKSDSIVSADAITVEGFHTFDSSAPKIMLQAGSTENGLVPRYPLSSGHVEVPITSSNTEAKPVTLAPSSSEPDVICIPSPPLPLSPRLSRKLSDIRNPQSNLGDHVGEHPVNDYSVDRQMDTIHRNLSETFNSDSKNDEKKVKQDHISSVLNPSVMFKQPTHLITPSEITKAGSTSENNIIDGKSEGEGKMQDVGNAEVEVKVVGETRSNQIDEFGRGSQQNPVSDSKEKIFCSQASDLGIEMAREGCVITAGDTYLTEEPGQLDSTGAVSLAQPPDSGEDGLQDTAKDAHEKVSDSSTSVAVPPSPVPNAKGKRQKGKNSQASGLSFSSPSVCNSTDSSSEPNGNSSLPSAENAFPQILAMQESLNQLLTMQKEMQKQMTMIVAVPVTKEGRRLEAALGRNMEKAVKANSDALWARIQEENAKNEKLLRDRIQQITGLISNFMNKDLPAILEKTVKKEMASVGQAVVRAMSPAVEKIISSAIVESFQRGVGDKAVNQLDKSVSSKLEATVARQIQAQFQTTGKQVLQEALKSSFETSAVPAFEMSCKAMFEQVDATFQKGMAEHSAAVQQRLESAPTSLAMTLRDSINSASSISQTLSREVLEGHRKLVALAATRTNSGTLNPLPVQLNNGPLLREKVEVPLDPTQELGRLISERKFEDAFIGALHRSDVSIVSWLCSQVDLHGLLAMVPLPLSQGVLLSLLQQLACDINNDTTRKIQWLTDVASAINPADPVIAMHTRPIFEQVYQILNHQRSLPSTSPTDLSSIRLLLHVVNSMLMTCK 1328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02320 1328 SMART WD40_4 204 244 IPR001680 GO:0005515
Vimu2g02320 1328 SMART WD40_4 327 364 IPR001680 GO:0005515
Vimu2g02320 1328 MobiDBLite consensus disorder prediction 73 92 - -
Vimu2g02320 1328 ProSiteProfiles Trp-Asp (WD) repeats profile. 331 373 IPR001680 GO:0005515
Vimu2g02320 1328 SUPERFAMILY WD40 repeat-like 180 475 IPR036322 GO:0005515
Vimu2g02320 1328 FunFam enhancer of mRNA-decapping protein 4 163 477 - -
Vimu2g02320 1328 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 253 IPR001680 GO:0005515
Vimu2g02320 1328 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 2 1326 IPR045152 GO:0031087
Vimu2g02320 1328 MobiDBLite consensus disorder prediction 1 53 - -
Vimu2g02320 1328 Gene3D - 167 517 IPR015943 GO:0005515
Vimu2g02320 1328 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 211 248 - -
Vimu2g02320 1328 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 164 476 IPR032401 -
Vimu2g02320 1328 MobiDBLite consensus disorder prediction 805 898 - -
Vimu2g02320 1328 MobiDBLite consensus disorder prediction 12 53 - -
Vimu2g02320 1328 Gene3D - 1240 1327 IPR044938 -
Vimu2g02320 1328 FunFam Enhancer of mRNA-decapping protein 4 1240 1326 - -
Vimu2g02320 1328 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 331 364 - -
Vimu2g02320 1328 MobiDBLite consensus disorder prediction 861 898 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02320 Vimu-Chr2 18604754 18613287 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02320 K12616 - gmx:100798228 2087.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02320 2 18604754 18613287 Vimu2g02320 2 18604754 18613287 ECH