Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02301 ATGGAGGAACAAATCCCGTTTAAGAATCTCCATAGCCGAGAGTATTCGGGTCACAAGAAGAAGGTGCACTCTGTGGCGTGGAATTGCATCGGCACAAAACTTGCTTCTGGCTCTGTGGACCAAACTGCGCGAATATGGCATATTGAACCACATGGGCATGGCAAGGTCAAAGATATCGAACTGAAAGGTCACACTGATAGTGTGGATCAGCTATGCTGGGACCCCAAACATGCTGATTTGATTGCAACTGCATCAGGTGACAAGACTGTTCGCTTGTGGGATGCTCGAAGTGGAAAATGCTCACAACAGGCAGAACTTAGTGGGGAGAATATCAACATCACTTACAAACCTGATGGGACTCATGTAGCTGTTGGTAACAGGGATGATGAATTAACAATACTGGATGTTCGGAAGTTCAAACCAATTCACAGGCGCAAGTTCAATTATGAGTGCCTTTTCTCTGCTTTCACTTCTACTCCAGCCATTGCAACAGAGAAAGTATGGGGTTTATACATTTATGTTTTGTGGTCCAAGGCTGTTGAGAAGTGGTGTGTTGGACAAGGATTGAAGAATGAACTCTACACTAAGCTTGAAGATGTAAATGAGATTGCTTGGAACATGACAGGGGAGATGTTCTTTCTAACAACAGGAAATGGGACTGTGGAAGTACTGTCTTACCCATCTCTTCGGCCTCTTGACACTCTCATGGCTCATACAGCTGGTTGTTATTGCATTGCAATTGATCCAGTAGGAAGATATTTTGCTGTTGGAAGTGCTGATTCCCTTGTCAGTCTGTGGAACATCTCAGAGATGCTCTGTGTGCGTACCTTCACAAAGCTGGAGTGGCCTGTCCGGACAATTGGCTTCAATTATACTGGGCATTTAATTGCTTCTGCAAGTGAAGACTTGTTCATTGATATATCCAATGTTCAAACTGGAAGAACAGTACATCAAATTCCTTGTAGAGCCGCTATGAACAGTGTTGAGTGGAATCCTAAGTACAACTTACTTGCATATGCTGGTGATGACAAAAACAAGTATCAGGCTGATGAAGGTGTTTTTCGCATTTTTGGTTTTGAAAATGCCTAG 1089 0.4343 MEEQIPFKNLHSREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIEPHGHGKVKDIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHRRKFNYECLFSAFTSTPAIATEKVWGLYIYVLWSKAVEKWCVGQGLKNELYTKLEDVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLRPLDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWNISEMLCVRTFTKLEWPVRTIGFNYTGHLIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIFGFENA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02301 362 FunFam THO complex subunit 3 1 162 - -
Vimu2g02301 362 ProSitePatterns Trp-Asp (WD) repeats signature. 81 95 IPR019775 -
Vimu2g02301 362 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 269 - -
Vimu2g02301 362 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Vimu2g02301 362 PRINTS G protein beta WD-40 repeat signature 81 95 IPR020472 -
Vimu2g02301 362 PRINTS G protein beta WD-40 repeat signature 254 268 IPR020472 -
Vimu2g02301 362 PANTHER THO COMPLEX SUBUNIT 3 THO3 5 359 IPR040132 GO:0006406
Vimu2g02301 362 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515
Vimu2g02301 362 FunFam THO complex subunit 3 224 358 - -
Vimu2g02301 362 Pfam Anaphase-promoting complex subunit 4 WD40 domain 282 331 IPR024977 -
Vimu2g02301 362 Pfam WD domain, G-beta repeat 12 46 IPR001680 GO:0005515
Vimu2g02301 362 Pfam WD domain, G-beta repeat 231 267 IPR001680 GO:0005515
Vimu2g02301 362 Pfam WD domain, G-beta repeat 60 94 IPR001680 GO:0005515
Vimu2g02301 362 Gene3D - 6 170 IPR015943 GO:0005515
Vimu2g02301 362 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 99 - -
Vimu2g02301 362 Gene3D - 182 358 IPR015943 GO:0005515
Vimu2g02301 362 ProSiteProfiles Trp-Asp (WD) repeats profile. 15 49 IPR001680 GO:0005515
Vimu2g02301 362 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 103 IPR001680 GO:0005515
Vimu2g02301 362 SMART WD40_4 54 94 IPR001680 GO:0005515
Vimu2g02301 362 SMART WD40_4 190 225 IPR001680 GO:0005515
Vimu2g02301 362 SMART WD40_4 270 309 IPR001680 GO:0005515
Vimu2g02301 362 SMART WD40_4 8 47 IPR001680 GO:0005515
Vimu2g02301 362 SMART WD40_4 312 350 IPR001680 GO:0005515
Vimu2g02301 362 SMART WD40_4 228 267 IPR001680 GO:0005515
Vimu2g02301 362 SUPERFAMILY WD40 repeat-like 11 344 IPR036322 GO:0005515
Vimu2g02301 362 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 15 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02301 Vimu-Chr2 18317108 18332475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02301 180 358 Miscellaneous Gene Families AT5G08390 22.652 4.28e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02301 K12880 - gmx:100812126 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02301 2 18317108 18332475 Vimu2g02301 2 18317108 18332475 ECH