Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01612 ATGGCTGTACCAGTAGAGGAAGCCATTGCTGCTCTATCAACATTCTCTCTCGAGGACGAGCAACCGGAGGTGCAGGGACCTGGAGTGTGGGTTTCAACTGAGAGAGGTGCAACAGAAAGTCCAATAGGTAAGTACAGCGATGTCTCTGCTTACCGACTATCTCTATCAGAGGACACAAAAGCTCTCAATCAGCTGAATGTCCTTAGCCAAGAGGGAAAGGAGATGGCATCGGTGCTTTACACTTATCGCAGTTGCGTCAAAGCACTTCCTCAGCTACCTGATTCTATGAAGCAAAGTCAAGCTGACTTATACTTGGAGACATATCAAGTTCTGGATTTGGAAATGAGTCGTCTGCGTGAAATTCAGCGATGGCAAGCATCAGCTTCTTCAAAGTTAGCTGCTGACATGCAACGTTTTTCTAGGCCTGAACGACGCATTAATGGCCCTACAATATCTCACTTGTGGTGTGTTATAATTATTATGCTTTTGTTGGTAATTCTTGTTATTGTTGTTGTTTTGGATTTTTTGATAGCTTTGTTCTTGCTTGATGTTTTGGTGCAACTTGATCACCTTAAAAATGCTAAGGCAAGCATACCAAATGACTTTACATGGTATAAAAGGACTTTTACACAAGTCAGTGGTCAGTGGCAAGACAGTGATTCAATGCGGGAGGAATTAGATGATTTGCAGATTCTTTTCCAAAATTGTCCATGTTCATATTGTACTTTGGAATATGCCAAACTAAAGATGGCCGATTTTCTTGAGCACAAGATGGGCTATTTTGTTGAATTTGCATGTGGAGATGTTCCGAATAGTGTAGAAGACATTCTTCAAGTTCTTATAGTCTTTGTTGTAGAGTCTTTAGAATTGGACTTTGCCCTTCTCTTTCCAGAGCGCCACATTCTTTTGCGTGTTTTGCCTGTTCTTGTTGTCCTAGTGACATCATCAGAGAAAGATAGCGAGTCTCTGTACAAGAGAGTGAAAATCAACAGACTGATCAATATATTTAAGAATGAGGCAGTCATTCCTGCCTTTCCAGATCTGCATTTGTCTCCTGCTGCAATATTAAAGGAATTATCAACATACTTTCCTAAGTTTTCTTCCCAAACTCGCCTTCTCACACTTCCGGCACCACATGAGCTTCCACCTCCCATCCGTGCTGAGCATGATGATTTTGTAATTCGATTTGCTTCTGCAATGAATCAGCTGTTATTGTTGAAGTCAACTGATGGTTCTGATATTGAATGGAGCAAGGAAGTCAAGGGGAACATGTATGATATGATTGTTGAAGGTTTTCAGCTATTAAGCAAATGGACTGCACGCATATGGGAACAATGTGCATGGAAATTTTCTCGCCCATGCAAAGATCCATCCGAATCATTTTCTGACTATGAAAAGGTAGTAAGATATAATTACAGTGCGGAAGAAAGGAAAGCACTGGTTGAAATTGTGAGCTACATAAAGAGTGTCGGATCTATGATGCAGCGGTGTGATACTTTGGTTGCTGATGCTTTATGGGAAACAATACATGCTGAAGTCCAGGATTTTGTCCAAAACACATTAGCTATTATGTTGCGGACTACCTTCAGAAAGAAGAAGGACCTCTCTAGGCAGTTGTGGTTCCTTGGGAGGGTTTGCTTTTTAAGGAGGGTTGGTGTCTGGGGGCAGACACGGTTTTTGTATCTTAGTGTGGACAGGTCTGTACCTGTGAGAAGGGACTGGATTCTTTCAGATATGCGGACCCTTTCAGCTGATTGGATGGCTAATACAAACAAATCAGAATCTGAGTTACAGTCCTCACAGCATGGAGGTGAAGATAGCAAAGCAAACATATTTTATCCAAGAGCAGTTGCCCCAACTACCGCTCAGTTCTTAATATATGAGGTGGTTTCTGGTGGTAACCTTAGGAGGCCAGGTGGACTCTTTGGCAATAGTGGCTCAGAAATCCCATTCTCTGGTAAATTATCAGGTTCAGATTATGTTTGCCCCTGGCATGTGGACCTAAGAGTGAAGATTGCGACTGTTGCAACATTGACAGATCTTGGTTTCTTATGGTTTAGAGAATTCTTTTTAGAGTCTTCACGAGTCATTCAGTTTCCAATTGAATGCTCTCTTCCCTGGATGTTGGTGGATTGTGTACTTGAGTCACCAAATTCTGGTCTTCTCGAGAGTGTTCTGATGCCTTTTGACATCTATAATGATTCAGCTCAGCAAGCCTTGGTGTTGCTGAAACAACGTTATCTATACGATGAAATTGAGGCTGAGCTTCTTGGAAGGATGATTAATTTGCGTAGTTTGATCACTGAACGGATTAACAAGGCTTTCCGTGAAAATATTGAGTTTTTGTTTGATCGATTTGAATGCCAGGATCTTTGTGCCATAGTGGAATTAGAGAAGTTGTTGGATGTCTTAAAGCATTCCCATGAACTACTGTCTAGAGATCTTTCTATTGACTCTTTCAGTCTCATGTTGAATGAGATGCAAGAGAACATATCCCTTGTATCATTTTCTAGTCGACTGGCCTCACAGATTTGGTCAGAGTTGCAAACCGATTTTTTGCCAAATTTCATTCTCTGCAATACTACTCAACGTTTTATCAGATCATCAAGAACTGTTCCTGTTCAAAAGCCATCTGTACCCTCTGCTAAGCCTAGCTTCTATTGTGGTACTCAAGATTTGAATTCTGCCCATCAAAGTTTTGCACGATTGCATAGTGGGTTCTTTGGAATACCGCACATGTATTCTATTGTTCGACTTCTGGGATCCCGATCATTACCTTGGCTTATTAGAGCTCTTCTTGATCACATATCAAACAAGATTACTTTGTTTGAACCAATGATTACAGGATTACAAGAATCTTTGCCAAAATCAATTGGGCTTCTTCCTTTCGACGGAGGTGTGACAGATTATTTCTACACAGGTTGTGTGAGACTTGTTAAGGAACATCTTAACTGGGAGACAAAATCGGAGCTGAAGGCTGAGGTTCTTCATGGCTTAAAAGAGATTGGAAGTGTATTATATTGGATGGGGCTTCTAGATATTGTGTTGTCCCATCCTAATATTTTGGACTTGAACCGGGCTGGTCTATACTTAGACAAGACAAAAGAAAAGGATTCTATGGATTTCATGCAAACTGCTCCTTGGCTGGGCTTGCTTCCTGGAGGAGATGGTCAAATAGTGACTTCCCAAGATGGTGAACACAGCCCTGTTGTTAGTCTCTTTAAATCAACAGCTTCTGCAATGGTTTCATACCCTGGTTGCCCATCGCCTTCCTCTTTCCATATTATGGCAAAACAAGCAGAAGCTGCAGATCTTTTGTACAAGGCTAACCTGAATTCTGGAAGTGTGCTGGAGTATGCACTTGCCTTCACTAGTGCTGCGTTGGATAAATATTGTTGCAAATGGAGTGCTGCACCCAAAACAGGCTTCATTGACATTACAATTTCCAAAGACTTCTACCGAATATACAGTGGTCTCCAAATTGGATACTTGGAAGAGTCTGCTCAAGTGTCATCAAATAGTCATGACAGGCTGGGAGATTCAATTGCTTGGGGGGGCTGCACTATTATATATTTGCTTGGGCAGCAGCTGCATTTTGAGCTCTTTGACTTTTCGTATCAGATCCTCAATATCGCAGAAGTGGAGGCTGTATCTGTTATGCAAACACATAAGAACTCACAATTTTCTGTCCAGGGATGGGAAGCCTTATTGGAAGCAATGAAAAAAGCTAGGAGATTAAATAACCATGTATTCTCTATGCTTAAAGCACGTTGCCCCTTAGAAGAAAAGACAGCTTGTGCTATTAAGCAAAGTGGTGCTCCAATACATCGTATAAAATTTGACAACACAGTTTCAGCATTTGAAACACTGCCACAGAAAGGTGCTTAG 3888 0.4138 MAVPVEEAIAALSTFSLEDEQPEVQGPGVWVSTERGATESPIGKYSDVSAYRLSLSEDTKALNQLNVLSQEGKEMASVLYTYRSCVKALPQLPDSMKQSQADLYLETYQVLDLEMSRLREIQRWQASASSKLAADMQRFSRPERRINGPTISHLWCVIIIMLLLVILVIVVVLDFLIALFLLDVLVQLDHLKNAKASIPNDFTWYKRTFTQVSGQWQDSDSMREELDDLQILFQNCPCSYCTLEYAKLKMADFLEHKMGYFVEFACGDVPNSVEDILQVLIVFVVESLELDFALLFPERHILLRVLPVLVVLVTSSEKDSESLYKRVKINRLINIFKNEAVIPAFPDLHLSPAAILKELSTYFPKFSSQTRLLTLPAPHELPPPIRAEHDDFVIRFASAMNQLLLLKSTDGSDIEWSKEVKGNMYDMIVEGFQLLSKWTARIWEQCAWKFSRPCKDPSESFSDYEKVVRYNYSAEERKALVEIVSYIKSVGSMMQRCDTLVADALWETIHAEVQDFVQNTLAIMLRTTFRKKKDLSRQLWFLGRVCFLRRVGVWGQTRFLYLSVDRSVPVRRDWILSDMRTLSADWMANTNKSESELQSSQHGGEDSKANIFYPRAVAPTTAQFLIYEVVSGGNLRRPGGLFGNSGSEIPFSGKLSGSDYVCPWHVDLRVKIATVATLTDLGFLWFREFFLESSRVIQFPIECSLPWMLVDCVLESPNSGLLESVLMPFDIYNDSAQQALVLLKQRYLYDEIEAELLGRMINLRSLITERINKAFRENIEFLFDRFECQDLCAIVELEKLLDVLKHSHELLSRDLSIDSFSLMLNEMQENISLVSFSSRLASQIWSELQTDFLPNFILCNTTQRFIRSSRTVPVQKPSVPSAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMYSIVRLLGSRSLPWLIRALLDHISNKITLFEPMITGLQESLPKSIGLLPFDGGVTDYFYTGCVRLVKEHLNWETKSELKAEVLHGLKEIGSVLYWMGLLDIVLSHPNILDLNRAGLYLDKTKEKDSMDFMQTAPWLGLLPGGDGQIVTSQDGEHSPVVSLFKSTASAMVSYPGCPSPSSFHIMAKQAEAADLLYKANLNSGSVLEYALAFTSAALDKYCCKWSAAPKTGFIDITISKDFYRIYSGLQIGYLEESAQVSSNSHDRLGDSIAWGGCTIIYLLGQQLHFELFDFSYQILNIAEVEAVSVMQTHKNSQFSVQGWEALLEAMKKARRLNNHVFSMLKARCPLEEKTACAIKQSGAPIHRIKFDNTVSAFETLPQKGA 1295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01612 1295 PANTHER CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED 756 1286 IPR008081 GO:0030833|GO:0031267
Vimu2g01612 1295 PIRSF CYFIP 1 544 IPR008081 GO:0030833|GO:0031267
Vimu2g01612 1295 PIRSF CYFIP 755 1295 IPR008081 GO:0030833|GO:0031267
Vimu2g01612 1295 PIRSF CYFIP 570 756 IPR008081 GO:0030833|GO:0031267
Vimu2g01612 1295 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 1151 1167 IPR008081 GO:0030833|GO:0031267
Vimu2g01612 1295 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 743 773 IPR008081 GO:0030833|GO:0031267
Vimu2g01612 1295 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 299 314 IPR008081 GO:0030833|GO:0031267
Vimu2g01612 1295 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 461 479 IPR008081 GO:0030833|GO:0031267
Vimu2g01612 1295 Pfam Cytoplasmic Fragile-X interacting family 756 1254 IPR008081 GO:0030833|GO:0031267
Vimu2g01612 1295 Pfam Cytoplasmic Fragile-X interacting family 424 538 IPR008081 GO:0030833|GO:0031267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01612 K05749 - gmx:100775991 2020.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01612 2 11341889 11363676 Vimu2g01612 2 11341889 11363676 ECH