Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01498 ATGGCCGACAAGTACAACCTCAAGAACCCCGCCGTCAAGCGGATCCTCCAGGAGGTCAAGGAGATGCATTCCAACCCCTCAGACGATTTCATGAGCCTCCCTCTCGAGGATTTGTGTGAGATCGCGGTGTTGTGCGTGTGGTTCAATGGGATTTGTCGTGGTGCGTGGCGAGAAATTGAAAATATATTTGAGTGGCAATTTGCGATTAGAGGGCCTCGTGATACTGAATTTGAGGGTGGTATTTATCATGGACGGATCCAGCTGCCTTCAGAGTATCCATTCAAACCCCCTTCGTTTATGTTGTTGACACCTAATGGTCGTTTCGAGACTCAAACCAAGATTTGCTTGAGCATTTCAAATCATCACCCTGAGCATTGGCAACCATCATGGAGCGTGAGGACTGCTCTAGTTGCATTGATTGCTTTCATGCCAACCAACCCAAATGGTGCATTGGGATCTTTAGACTACAAGAAAGAAGAGAGGCGTACCCTGGCTGTAAAATCTCGTGAAGGTCCTCCTAAATTTGGGACTCCTGAACGTCAAAAGCTGATCGATGAGTTTGCGTTTTCTGTAATATATTGTGCTGCTGAGTGGACTTGGTTATCCCAGATACACGAGTACATGTTAAGCAAGGCACCCCCAGTTCCTCAACCAAGCGCCACAGAGGCTTCCGATGAGCATCCCAGAAGTGAGGAGGCTGAGGCCCTGGTTGATTCACCTAATCCTGAGTCCTTACCAGCTGGAGAGAGGATTCCAGATCAAGAAGGTGATGGAATTGTTGAAGAACAAGAAGTCCTTGCAAATGCTAACCCTGCAGGAGTTGAAGTATCAAGCGAGATTCAATCAAATGTTTCAAGGAATGAGCTGCCCCAAAGGTCAGATACAACTGCAAGGGTTCACAATCCCAGGCCAGAGACAAGGGTACAGAAACCTGATGATAGGCTGTTCACGTTGGCAGCTATCGGACTCGCTATTGCTATTGTGGTCCTTTTGCTCAAAAAGTTCATTAAATCTACCGAACATGGGGCACTTTTCTCCAATGGATCTTGA 1050 0.4724 MADKYNLKNPAVKRILQEVKEMHSNPSDDFMSLPLEDLCEIAVLCVWFNGICRGAWREIENIFEWQFAIRGPRDTEFEGGIYHGRIQLPSEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRTLAVKSREGPPKFGTPERQKLIDEFAFSVIYCAAEWTWLSQIHEYMLSKAPPVPQPSATEASDEHPRSEEAEALVDSPNPESLPAGERIPDQEGDGIVEEQEVLANANPAGVEVSSEIQSNVSRNELPQRSDTTARVHNPRPETRVQKPDDRLFTLAAIGLAIAIVVLLLKKFIKSTEHGALFSNGS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01498 349 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 188 IPR000608 -
Vimu2g01498 349 CDD UBCc 12 150 IPR000608 -
Vimu2g01498 349 FunFam ubiquitin-conjugating enzyme E2 32 55 197 - -
Vimu2g01498 349 Gene3D Ubiquitin Conjugating Enzyme 2 185 IPR016135 -
Vimu2g01498 349 MobiDBLite consensus disorder prediction 274 297 - -
Vimu2g01498 349 SUPERFAMILY UBC-like 11 156 IPR016135 -
Vimu2g01498 349 SMART ubc_7 13 196 - -
Vimu2g01498 349 MobiDBLite consensus disorder prediction 213 254 - -
Vimu2g01498 349 Pfam Ubiquitin-conjugating enzyme 60 148 IPR000608 -
Vimu2g01498 349 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 10 151 - -
Vimu2g01498 349 MobiDBLite consensus disorder prediction 270 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01498 Vimu-Chr2 10353519 10355925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01498 1 347 Miscellaneous Gene Families AT3G17000 56.818 1.67e-120 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01498 K10578 - gmx:100798396 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01498 2 10353519 10355925 Vimu2g01498 2 10353519 10355925 ECH