Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01485 ATGAAAACAGGGTGTGGGATTATGGCTCTCAGATATTTCTGCACTACAAATATTTCAAGCAGATATCATGATGCTTCTACTAAAACACTTGCTCCATCTTCTCTCTTTTTAACAAACTCAGGCATGCACAGTTCCACCCCAGAGACAAACACCAAGAACAAGTCTACTGCTGACAACTTGAAGAGCATAGTCAACACTCTCGTGCTTCCTTCCATTTCATCTTCTCCACTTCACTCTCTCCACAAAGGCAACTGGGTCAAGCTCATTTGTGGTGCAAGCTTTGAGGATGTTGTTGATATCAGAAATCTCAGCCTGGTTTACACTCTTGCTGGAGTTGACTGCATTGACTGTGCTGCTGATGCATCAGTTGTTAGTGCTGTGAATGAAGGAATTGAAGCTGCAAGAGATATTGTATGCGTTAGAAGGCCGTGGGTGATGATCAGTGTCAATGATGATAAAGATCTTCATTTTCGAAAAGCCGAATTTGATCCAGAGGACTGTCCAGCAGACTGTTCAAGGCCTTGTGAAAATGTGTGCCCTGCTAGTGCAATATCATTCCTTGGGAAATCTTTGGGAATTTCATATAATACTGAAGCACCAAGTGTGCTGAAGGATGGAATCATAACAGAACGCTGTTATGGCTGTGGTCGTTGTGTTCCAGTTTGCCCCTACGATAAAATAAGAGAGGTAACATATGTAAGAGATGCTATTACAACTGCTGATCTAATCCAGAGAGATGACATTGATGCTATGGAGATACATACAAGTGGAAGACAGAGTAATTTGTTCAAACAACTCTGGAGTGCTCTGGGAGATTCAGTAGGATATTTGAAGCTTGTAGCTGTTAGCTTACCTAATGGTGGTGATTCAACGATATCCTCCATGAACTATATGTTCTCCATCATGAAACCCAATCTTCAAAGCTTCAACTTATGGCAGTTAGATGGTCGTCCTATGAGTGGAGATATTGGGAGAGGAGCAACAAAGGAATCAATTGCCTTTGCTGTTCAACTGGCTAAAGCAAAAGAAAGACCTCCTGGTTTTCTTCAACTTGCTGGTGGAACCAATGCTCACACAATTGAAGGGTTGAAAAAAGAGGGACTCTTTCAAACAACTATTAGTGAATATTTGCATGATGATGAATCACAAATAAACTCATCTGGTTCACCACATGCTTTGATCGGTGGCATAGCATACGGTGGCTACGCACGGAAGATTGTTGGTAGAATATTGAGATCAATGCAATCAGAACATGGTGGAGCTGCTTCAATTGAGGATCATTCTGAGTATCTCTTGATGGCTCTTAAGGAAGCACTTGCTTTGGTGGGACCTGTTAAATGTCTGTGA 1347 0.418 MKTGCGIMALRYFCTTNISSRYHDASTKTLAPSSLFLTNSGMHSSTPETNTKNKSTADNLKSIVNTLVLPSISSSPLHSLHKGNWVKLICGASFEDVVDIRNLSLVYTLAGVDCIDCAADASVVSAVNEGIEAARDIVCVRRPWVMISVNDDKDLHFRKAEFDPEDCPADCSRPCENVCPASAISFLGKSLGISYNTEAPSVLKDGIITERCYGCGRCVPVCPYDKIREVTYVRDAITTADLIQRDDIDAMEIHTSGRQSNLFKQLWSALGDSVGYLKLVAVSLPNGGDSTISSMNYMFSIMKPNLQSFNLWQLDGRPMSGDIGRGATKESIAFAVQLAKAKERPPGFLQLAGGTNAHTIEGLKKEGLFQTTISEYLHDDESQINSSGSPHALIGGIAYGGYARKIVGRILRSMQSEHGGAASIEDHSEYLLMALKEALALVGPVKCL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01485 448 Pfam 4Fe-4S binding domain 207 225 IPR017896 -
Vimu2g01485 448 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 212 223 IPR017900 -
Vimu2g01485 448 Pfam Iron-Sulfur binding protein C terminal 242 443 IPR021039 -
Vimu2g01485 448 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 158 189 IPR017896 -
Vimu2g01485 448 PANTHER PHOTOSYSTEM I IRON-SULFUR CENTER-RELATED 80 241 - -
Vimu2g01485 448 SUPERFAMILY 4Fe-4S ferredoxins 148 236 - -
Vimu2g01485 448 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 203 232 IPR017896 -
Vimu2g01485 448 Gene3D - 164 243 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01485 - - var:108342585 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01485 2 10214233 10217801 Vimu2g01485 2 10214233 10217801 ECH