Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01478 ATGGCTTTTACGATGGTGGGACAAATTATCAATGGAGGAGAAATACTTCAGTCTAATAAGACAGTGACGCCATCAACTGATAAACCAACAACGTTGAAACCAGTTCTAGTGACTCCACCAACGTTTCCTTTGGGCGATTACAATAAGGGAAGAAGGAGCAGCGCCATTGTTCCAATTGTGGAGACTTTGAATTTTGTCCCGAGCAAAGGGAAGAAGAGAAGGGTGGTGTTAGGGTTTGGAGCAACAATGGAGGGTGGAGAGGAGGGAGTGGAGATGGTGGTGGACTCGAAGGACTTACAGCAACAGAGTAAAGCCTTGGACAAGCTCACTGACCGCGTCGAGGATCGCCAATTGGACTCTACTCGCGTCCAGGAGGCAATGGCTTCCATCGCTGCTTCTGCTGAAGCTGATCGCAATGCCATGCGTATCAGGGAGAAAGAATTAGCTGCTGTTAAGATAAATGCAGCGGATGTTGATATAATTGCTAATGAGCTAGAGTTGGACAAAAAGGTTGCGGAAAGAACTTTGCGCGAGCACAAAGGTGATGCAGTTGCTGCCATTCGGCACTTGCTTCACTAG 579 0.4767 MAFTMVGQIINGGEILQSNKTVTPSTDKPTTLKPVLVTPPTFPLGDYNKGRRSSAIVPIVETLNFVPSKGKKRRVVLGFGATMEGGEEGVEMVVDSKDLQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADRNAMRIREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAIRHLLH 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01478 192 Pfam HYPK UBA domain 151 191 IPR044034 -
Vimu2g01478 192 Coils Coil 99 119 - -
Vimu2g01478 192 PANTHER HUNTINGTIN-INTERACTING PROTEIN K FAMILY MEMBER 85 192 - -
Vimu2g01478 192 Coils Coil 162 182 - -
Vimu2g01478 192 CDD UBA_HYPK 151 191 IPR038922 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01478 Vimu-Chr2 10157726 10164096 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01478 - - gmx:100527445 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01478 2 10157726 10164096 Vimu2g01478 2 10157726 10164096 ECH