Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01459 ATGCAAAATGCTGCCATTAAAAGCGTAAACGATAGCAGTTTGAAGACTGGGAGTGCACAGCAAAAGAAAAGCAAGAAGACAGATAGAAGAAGCAATTTCGGAAAGAGGTTTTTGTCATCTTGCATGGAATTTCAATCCCCAACTTCTCGCCCTACCAGGAGTGATGTCGTTTTGAACCACCATCCACCATTTCCGATCATTCGCCAGTTTCTGTTGCCGCCGCCGCCGCTGCCACCACCCTCCACGGTGCTGCTTCCGGTACCTTTCAACCCTTCACTTTTCTTCACGATGGATAATCAAAGGTCCATCTCTCTGCTTCAGTTCATGGTTGATGAAGGACTTGTTCCGTCTGTAGAAGAGGAAGATAAACGAAAAAGTGTTATTCGGAAGCTTAAACAGGTAGTCTCATCGTGGATCAAGAAGGTAGCATGCCTGCATCAACTACCAGACCATCAAATTGCTGTAACATCTGCCACGGTATTGACTTATGGATCTTATGGCCTCGGAGTTCACAGTTCAGGTTCTGACATTGATGCTTTGTGTGTTGCTCCTTTCTTTGCGTCAATTGCAGAAGACTTTTTTATTGTGTTGCACGACATGCTTAAAAGAAGACCTGAAGTATCATATATTCACTGTGTCAAGAGTGCAAAAGTCCCTTTAATGCGATTTAAATTTGAAGGGGTTTCCATTGATCTTCCATATGCTCGGCTTAATGTACTATATGTTCCTGAGAATGTTGATATATTAAATCCGTTTTTCATGAGGAATATTGACGATACCAGCTGGAAAAGTTTGTCTGGGGTACGAGCAAATAAATACATTCTCCATCTAGTTCCTAATAAAGAGAAATTTCAATGCGTTCTACGATGTCTTAAACTGTGGGCAAAAAGGCGAGGAGTTTATGGAACTTTGCTTGGCTATTTGGGAGGAGTTCATATGACAGTTCTTGCAGCATATGTTTTTCTGAGACACCCTGATGCCACCTTAAACGCTCTAATTATGCACTTTTTTCAAACATTTGCGTTTTGGCCCTGGCCTACTCCAGTGATGTTGCAGGAAGGAATGTTAACAGTTGTAGACGGGATAGAGACACGGTCCTACATGCCTATATTTCTGCCATCTAGCCGGTATGAGCATTGTCATACAAGTATTACTAAAAGCACTTTCTTTCGGATCAGGAGTGAGTTTCTTCGGGGACATGAAATGACAAAGGATATTTTGAAGCCAGATTTCCTCTGGGATAATGTATTCGAGCCTTTTCCTTACACAGAAAGATACTCCCGATTTCTCAAAATTTGTCTCTCTTCTCCTAACCATTATGCACTCGTAGAATGGGTTGGCTGGGTAAAGTCACGCTTTCGAGGTCTTCTTCTGCATCTGGAGGCTACTCAAGGATTTTGTGACCCTAACCCTACAGAATATGTTGATAGTGAGAAAACAGAGCCAAATATAGTTTTCTATTGGGGTTTGAAATCTACCAAGAATAATTTCCTGGACATTGATTCGGTAAAGGGGGAGTTTATGAAGATTATAAAGAATGGTTATGAAGGTTCTCCTGGGAGGATGGAGATGGCCATCCTGATAGCTTCTCAGCTGCCAAATTGA 1605 0.4199 MQNAAIKSVNDSSLKTGSAQQKKSKKTDRRSNFGKRFLSSCMEFQSPTSRPTRSDVVLNHHPPFPIIRQFLLPPPPLPPPSTVLLPVPFNPSLFFTMDNQRSISLLQFMVDEGLVPSVEEEDKRKSVIRKLKQVVSSWIKKVACLHQLPDHQIAVTSATVLTYGSYGLGVHSSGSDIDALCVAPFFASIAEDFFIVLHDMLKRRPEVSYIHCVKSAKVPLMRFKFEGVSIDLPYARLNVLYVPENVDILNPFFMRNIDDTSWKSLSGVRANKYILHLVPNKEKFQCVLRCLKLWAKRRGVYGTLLGYLGGVHMTVLAAYVFLRHPDATLNALIMHFFQTFAFWPWPTPVMLQEGMLTVVDGIETRSYMPIFLPSSRYEHCHTSITKSTFFRIRSEFLRGHEMTKDILKPDFLWDNVFEPFPYTERYSRFLKICLSSPNHYALVEWVGWVKSRFRGLLLHLEATQGFCDPNPTEYVDSEKTEPNIVFYWGLKSTKNNFLDIDSVKGEFMKIIKNGYEGSPGRMEMAILIASQLPN 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01459 534 FunFam Poly(A) polymerase alpha, putative 116 272 - -
Vimu2g01459 534 MobiDBLite consensus disorder prediction 1 20 - -
Vimu2g01459 534 FunFam Nuclear poly(A) polymerase 3 422 527 - -
Vimu2g01459 534 Pfam Poly(A) polymerase central domain 97 419 IPR007012 GO:0043631|GO:1990817
Vimu2g01459 534 MobiDBLite consensus disorder prediction 1 32 - -
Vimu2g01459 534 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 420 527 IPR011068 GO:0003723|GO:0016779|GO:0031123
Vimu2g01459 534 SUPERFAMILY PAP/OAS1 substrate-binding domain 279 419 - -
Vimu2g01459 534 Gene3D Poly(A) polymerase predicted RNA binding domain 421 528 - -
Vimu2g01459 534 Gene3D Beta Polymerase, domain 2 116 272 IPR043519 -
Vimu2g01459 534 SUPERFAMILY Nucleotidyltransferase 88 275 IPR043519 -
Vimu2g01459 534 Pfam Nucleotidyltransferase domain 157 192 IPR002934 GO:0016779
Vimu2g01459 534 CDD NT_PAP_TUTase 123 238 - -
Vimu2g01459 534 Gene3D - 97 417 - -
Vimu2g01459 534 PANTHER POLY A POLYMERASE 88 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01459 Vimu-Chr2 9990595 9995341 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01459 K14376 - qsa:O6P43_003700 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01459 2 9990595 9995341 Vimu2g01459 2 9990595 9995341 ECH