Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01456 ATGACATTGACAGACTTTATGAGGGAGAAGAAAGGTCAGATTTGGAGGTTGAATGATTGGGGTATGAGAAGGTTAGCTTACAAAATAAAGAAAGCTAACAAAGCCCACTACATGTTGATGAACTTCGAGTTGGATGCAAAATATATCAACGACTTGAAGACTTTGTTGGACCAAGATGAAAGAGTTATTCGGCATCTTGTGATAAAGAGGGACGAGGCAATCACTGAAGATTGCCCTCCTCCTCCGGAGTTTCAAACTCTGCGTGCAAACGCAGATGATAACGACGACGAAGAATTTGATGATGACTGGGATGGTGAAGATGAGCTTGATGATGATGATGGTATTATATACGTAGATGGTGATGACGATGATGACATGGATTCAAGAAATGAGACATCTGCAAATATTAGACAAGCAGAAGATATAAGAGAGTTGAGGACTGAGAACATAGGTAGGTAA 459 0.4031 MTLTDFMREKKGQIWRLNDWGMRRLAYKIKKANKAHYMLMNFELDAKYINDLKTLLDQDERVIRHLVIKRDEAITEDCPPPPEFQTLRANADDNDDEEFDDDWDGEDELDDDDGIIYVDGDDDDDMDSRNETSANIRQAEDIRELRTENIGR 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01456 152 CDD bS6 3 70 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vimu2g01456 152 SUPERFAMILY Ribosomal protein S6 4 79 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vimu2g01456 152 ProSitePatterns Ribosomal protein S6 signature. 21 30 IPR020815 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vimu2g01456 152 MobiDBLite consensus disorder prediction 129 152 - -
Vimu2g01456 152 Gene3D - 1 77 IPR014717 -
Vimu2g01456 152 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 5 90 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vimu2g01456 152 MobiDBLite consensus disorder prediction 93 128 - -
Vimu2g01456 152 Pfam Ribosomal protein S6 3 69 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vimu2g01456 152 Hamap 30S ribosomal protein S6 [rpsF]. 1 72 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vimu2g01456 152 MobiDBLite consensus disorder prediction 74 152 - -
Vimu2g01456 152 NCBIfam 30S ribosomal protein S6 4 71 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01456 - - gmx:100790128 197.978
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01456 2 9965116 9965574 Vimu2g01456 2 9965116 9965574 ECH