Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01453 ATGGATATGCGAGGAGATGGGATTTTCCCGGATGAGGTTGTCATTCAGATTCTTGCAAGGTTGCCTGTGAAGTCCCTTTTCAGGTTCAAAACCGTGTGCAAACTGTGGAATAGGTTGTCTTTAGATAAGTATTTTGTTCAACTCTACAATGAGGTTTCTAGGAAGAACCCCATGATTCTGGTCGAGGTTTCTGATTCGTATGGGTCCAAATCTAGCTTAATATGTGTTGATAATTTAAGGGGTGTGTCTGAATTTTCACTGAGTTTCTTGAATGATAGAGTTAAGGTTCGAGCATCTTGTAATGGCTTGCTGTGTTGCTCTAGTATTCCTGACAAGGGTGTCTTCTATGTCTGCAATCCGGTCACTCGCGAGTACCGGTTGCTTCCCAAGAGTAGGGAAAGGCCTGTGACTCGGTTTTATCCGGATGGTGAGGCTACCTTGGTTGGCTTGGCCTGTGATTCTTCTTATCAGAAGTTCAATGTTGTTCTGGCGGGCTACCATCGCACTTTTGGTCATAGGCCAGATGGGAGTTTCATATGTTTGGTGTTTAATTCTGAGTTGAACAAGTGGAGAAAGTTTGTCTCATTACAAGATGACCATTTCACTCACATGAATAAGAACCAGGTTGTTTTTGTCAATAATGCTCTGCACTGGTTGACAGTTAGCTCTACTTATATACTTGTGCTTGATTTAAGTTGTGACGTTTGGAGGAAGATGCAGCTACCTTATGACTTGATTTATGGAAATGGTTATAGGATTTATCTCTTGGACTTTGATGGCTGCTTGTCTGTTATTAAAATTTCAGAAGCATGGATGAATATATGGGTGCTAAAAGATTACTGGAAAGATGAATGGTGTATGGTGGATAAGGTGAGTCTGAGGTGTATCAGAGGAATGGTGCCAGGCATTTTCCCGATCAGTCAGACAGGTGAATATGTTTTTTTGGCAACTCATAAGCAGATTTTGGTGTATCATTGCAAGAGTCAAGTTTGGAAAGAAATGTACTCTGTGAAGTATAGCTCTACACTCCCATTATGGTTTTCTGCTCATGCATATCGCAGCACAATGTTCTCATGCAACTGA 1083 0.4137 MDMRGDGIFPDEVVIQILARLPVKSLFRFKTVCKLWNRLSLDKYFVQLYNEVSRKNPMILVEVSDSYGSKSSLICVDNLRGVSEFSLSFLNDRVKVRASCNGLLCCSSIPDKGVFYVCNPVTREYRLLPKSRERPVTRFYPDGEATLVGLACDSSYQKFNVVLAGYHRTFGHRPDGSFICLVFNSELNKWRKFVSLQDDHFTHMNKNQVVFVNNALHWLTVSSTYILVLDLSCDVWRKMQLPYDLIYGNGYRIYLLDFDGCLSVIKISEAWMNIWVLKDYWKDEWCMVDKVSLRCIRGMVPGIFPISQTGEYVFLATHKQILVYHCKSQVWKEMYSVKYSSTLPLWFSAHAYRSTMFSCN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01453 360 CDD F-box_AtFBW1-like 9 45 - -
Vimu2g01453 360 Gene3D - 9 45 - -
Vimu2g01453 360 Pfam F-box-like 10 43 IPR001810 GO:0005515
Vimu2g01453 360 NCBIfam F-box protein interaction domain 99 328 IPR017451 -
Vimu2g01453 360 SUPERFAMILY F-box domain 9 78 IPR036047 GO:0005515
Vimu2g01453 360 ProSiteProfiles F-box domain profile. 9 52 IPR001810 GO:0005515
Vimu2g01453 360 PANTHER BNACNNG10540D PROTEIN 9 338 - -
Vimu2g01453 360 SMART fbox_2 9 49 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01453 Vimu-Chr2 9946047 9947129 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01453 - - gmx:100811223 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01453 2 9946047 9947129 Vimu2g01453 2 9946047 9947129 ECH