Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00827 ATGGAGGGCAAAATCTTGGATCATCAGAATCAGGTGCAAGCGCAAGCTGTGGAAAATTTATCAGAAAGGCTTTCTAGTTTCTCCGTTAGGGACCAGATATCCAATTCCGATTCTCCTCAGGATGATGAGGTGGGTGGTAGGAGGAGGAGTTGCGATACTAAAGAGTATTCTGATTCTTTTATCTCTGATAGTACTGCACGGTACTCTATAAATTCTTCTAGGTTGTATCCTGAATTCCCCGAAAAACAATTGGAAAACCATAACGAAGATATGGAGTCTTCAGCTAATCTTCAGAAGCAGGGAAGGTACTTCTATTACGATACTCCACTGCAGGAAGATACTGGAGTGTGGATACCAGTTTCAGTTCCACCCATGTTAGAAGATGATCATAAAGAGTGGGCCAAAGGTTTTCACTCAAACGGTGGCTATTTTCCTGACGAGGACTTGGGGTGGAATCAATATGTAGGAGATGAAAGGGAATTGACTATGTGGGATGTGCTAGCAGAAATGTTACTTGTGGCTCGGGGAAAAGTGACTTCTTTGGCATCAGGAGATATTAATATGTGTAATTTTTCATGGATATCCAGCCGTGTACTACTTGAACAAGCTTGGAGAGAGATGGCACAAACTCTCACAGAGGCCAATTTTGGTAATGTGAAGGAACTATTAGAAGCCGAGCCCCCAAAATGGTTAGCTGATAGTGCTGCTTCTTCTTGTATGCTTTGTGGTGTGAGGTTTCATCCCATCATGTGCTCTCGACATCACTGCCGGTTTTGTGGAGGAATATTTTGTGGTGAGTGCTCTAAAGGGAGGAGCTTGTTGCCATCAAAATTCCGAGTTTCTGACCCCCAAAGAGTATGTGATGTATGCTGTGTCCGACTCGAGTCTGTACAGCCTTATTTAATGGATCATGTAAGCAATGCTGCTCAATTGCCAACCCATGACCTGACAGATCTGAGCACTTTGAGATCTTGGGTTAATTTTCCTTGGTGGCAGTCCATGGAATGTGAAATTTACAAGGCAACTAACACTATCAAGGCATATAATCAGATTGGTTTTCTAAAGCCCGAGAAGTCAATTCCAGATGTCATTCTAAGAAAAGCAAAAGGCCTTGCAATTATCACTGTGGTTAGAGTAGGAGTGGTGGTTACGTATAACATTGGAACAGGACTTGTGATTGCACGAAGGGAAGATGGTTCATGGTCTGCTCCATCTGCTGTGTCCACCTTTGGTGTAGGGTGGGGAGCTCAGGCCGGAGGAGAGTTGACAGACTTCATTATTGTCTTGAGAACAAATGATGCTGTCAAGACATTTAGTGGCAATATGCATGTTTCACTTGGTGCTGGTTTGAGTGCTGCAGTAGGCATTGTTGGTAGATCAGTTGAAGCTGATGTTCGAGCTGGTGATGGTGGTTATGCTGCTTGCTATACCTACAGCTGCAGTAAAGGTGCATTTGTTGGATGTTCACTTGAAGGGAGTATGGTGACTACTCGGGTGCAAGAAAATTCCCGTTTCTATGGCAGCCAGTCTATAGCTGCAACAGACATACTTGGCTCGTTGCCTAGGCCACCTGCTGCTGCCATTCTCTACCGTGCACTTGCTGATCTCTATTCCAAGGTTGATGGATGA 1629 0.4432 MEGKILDHQNQVQAQAVENLSERLSSFSVRDQISNSDSPQDDEVGGRRRSCDTKEYSDSFISDSTARYSINSSRLYPEFPEKQLENHNEDMESSANLQKQGRYFYYDTPLQEDTGVWIPVSVPPMLEDDHKEWAKGFHSNGGYFPDEDLGWNQYVGDERELTMWDVLAEMLLVARGKVTSLASGDINMCNFSWISSRVLLEQAWREMAQTLTEANFGNVKELLEAEPPKWLADSAASSCMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPSKFRVSDPQRVCDVCCVRLESVQPYLMDHVSNAAQLPTHDLTDLSTLRSWVNFPWWQSMECEIYKATNTIKAYNQIGFLKPEKSIPDVILRKAKGLAIITVVRVGVVVTYNIGTGLVIARREDGSWSAPSAVSTFGVGWGAQAGGELTDFIIVLRTNDAVKTFSGNMHVSLGAGLSAAVGIVGRSVEADVRAGDGGYAACYTYSCSKGAFVGCSLEGSMVTTRVQENSRFYGSQSIAATDILGSLPRPPAAAILYRALADLYSKVDG 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00827 542 MobiDBLite consensus disorder prediction 41 56 - -
Vimu2g00827 542 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 233 295 IPR017455 -
Vimu2g00827 542 CDD SYLF_FYVE 337 536 - -
Vimu2g00827 542 SMART fyve_4 225 296 IPR000306 GO:0046872
Vimu2g00827 542 SUPERFAMILY FYVE/PHD zinc finger 228 307 IPR011011 -
Vimu2g00827 542 FunFam Zinc finger family protein 219 301 - -
Vimu2g00827 542 PANTHER SH3YL1 PROTEIN 193 541 - -
Vimu2g00827 542 MobiDBLite consensus disorder prediction 27 56 - -
Vimu2g00827 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 305 IPR013083 -
Vimu2g00827 542 Pfam FYVE zinc finger 229 294 IPR000306 GO:0046872
Vimu2g00827 542 Pfam Las17-binding protein actin regulator 411 534 IPR007461 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00827 Vimu-Chr2 5063917 5067285 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00827 230 313 EF-hand Containing Proteins AT3G14270 34.831 1.09e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00827 K20523 - gmx:100813648 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00827 2 5063917 5067285 Vimu2g00827 2 5063917 5067285 ECH