Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00659 ATGGATGCTCACATTACTGATTTGGAGTGGGAAACTTCCAGTGACAGCAGCAGCAGCAGTGAGGATCAAGAGGATATTGATTTTCAATATGGTGGACAAGCCCGGAGCATATTATCGAGTTTAGAGGAAAGCATCGGAAAGATTGATGACTTTCTCTCATTTGAGAGGACATTTGTCCATGGGGATGTGGTCTGTTCCTCCTCCGACCCATCAGGACAGATGGGAAGGGTCACAAGTGTTGATGTGTCAGTGGACTTGGAAAGTGTTCAAGGAAAGAAATTAAAAAATGTGAACTCTAAGAAACTTATGAAGATTTGTTCAATTTCAGAAGGTGATTATGTAATTAAGGGGCCATGGATTGGTCAGGTTCAAAGGGTAGTAGACAGAGTCATTATATTGTTTGACGATGGAACTAAATGTGAGGTCATTACCTTGGAAAAAGATCAGATTTTACCACTGACTCATAATCTTCTTGAAGATTCACAGTATCCGTACTATCCAGGGCAGAGAGTCAAGGTTAAGAAGACCTCCACAGCTTCTAAACCAGCTAGGTGGCTGTGTGGCACCTGGAAAGACAATCATGGTGAAGGAACTGTTTGTGCTGTGGAAGCAGGTTTGGTTTACGTTAATTGGTTTGCCTCTGTCCTTTTCGGTTCCAATTTGAATGTAAATGTTCCTCTATGCTGGCAAGACTCAAAAAACATGACCTCGTTGTCCTGTTTTTCACATACAAACTGGCAACTTGGTGATTGGTGCATGCTTCCATCTGTGGACCAAAAGGAACAGATGATTCAAGATGCATCTCCATGTGATCCTCAAAACGAGCATAGTAAGGCTAGAGGATGTAAGACGAGTAACATTGGGGAATTATTTATAATTGAGAAGATAAAGACAGAAGTTGATGTCATTTGGCAAAATGGTGAACATACTCTGGGATTAGATCCGGTTAACTTAATTCCAGTGAATGTCATAAACAGTCATGAATTTTGGCCCCAGCAGTTTGTGATGGAAAAAGGTGCTTATGATGATACTCTCAAACCTAGCAATCAAAGATGGGGTGTTGTTCTTTCCATGGATGCAAAAGAGCATACTGTAAAGGTACAATGGAAAAATTCTCCCACATCCGGGACTGAAAATTTGACTCGAGATACAATGATGGAAACTGTGAGTGCCTATGAACTACTCGAGCATCCAGATTATTCTTGTTGTTTTGGCGATATTGTGTTCAAGGCGGCTCAAAAGCAGCTTGGTGACCAAGCTGACAAAGATAATGTGAAGTCGGCAACTGATGTAATTGTAGAGGCTCCTCTGATAAACCAGGACCAAATCAGTTATCAGAATAAATCTGTAGATAGCAGTTACCTCTCCTGCATTGGCAATGTTACTGGTTTCATAGATGGTGATGTGGAGGTCAAATGGGCTACTGGTTTAACAACAAAGGTTGCACCTTATGAAATTTTCCGAATTGATAAGCATGAAGGTTCAACTGCAACCCCTGTTCCTTATGAAGCAAATGTTGAGGAGTTCTCCCAAGAGATGATTGATCATAGAAGTCTTTCATCAGAACAGAAGGGAAAGACATTGTTAGATTGTAATGGCGATAGAGAAAATTGTGAAAAGCATCCAGGAGAGAGCAGTTCCTCATCCCTTCCTCAAGCTGCCATTGAACTTTTCTCCACCATTAAGGCTAGCATACTCAAAACACTTTCTGTTGCATCACTTTCTGGAAAATTCTCCTCAATCCCTAGGTTTGAAGAGGGAAATGAATCTAACTGTCTTGATAAGAAAGATTTGAACACTTGTGACCCTGACACTGACTCACATTTGGTGAGCAAGCTGCAGTCCTCTGAAGGCATAACTCCATACTGTGAAGTTATTGGGACTCATGAGAGGAATGACTTTCCAGTTTCTTTAGACAACAAAAGCTCAGATCAGTTGAAGCAGTTTGATGTAATTGATAATTGCTCAGACCACCACTTTTTTGATGAGGGGAAAGGGTTTTCGATGTCTCAGGTAAAAAAGGATTGGGTGAAGAAGGTACAACAAGAATGGAGCATCCTGGAAAAAAATCTCCCTGAAAGAATGGATCTCATGCGAGCAGCCATTGTGGGTGTGTCTGGAACACCTTATCATGATGGATTGTTTTTCTTTGATATACATTTCCCTTCAGAGTTTCCCAGCCAACCCCCGATGGTGCATTACATTTCTGGTGGACTAAGATTGAATCCTAATTTGTATGAGTCGGGTAAAGTCTGTTTGAGTCTCCTAAATACGTGGACCGGTACAGCTGCCGAAGTTTGGAACCCTGGAACTTCAACAATTCTTCAAGTCCTTCTTTCCCTGCAGGCCCTTGTCCTTAATGAGAAGCCTTATTTCAATGAGGCTGGATATGATCAACAAATTGGTAGAGCTGAAGGGGAGAGAAACTCAGTTAGTTACAATGAGAATGCTTTCCTTGTCACCTGCAAATCCATTTTGTATCTATTAAGAAAGCCTCCCAAGCATTTTGAGGCTTTGGTGGAGGAGCACTTTAGACAACGTTCCAGACATATACTTCTGGCTTGTAAGGCATATCTTGAAGGAGCTCCTATTGGATGTGCTTTTGGTGGTGGAAATACTGAGAATGAAAACCAAAAGGGAACTTCTACTGGATTTAAGATCATGCTTGCTAAACTTTTCCCAAAGCTTGTGGAGGCATTTTCTGACAAGGGAATTGATTGCAGCCAGTTTGCTGAGATGCAAAAGTAA 2748 0.4141 MDAHITDLEWETSSDSSSSSEDQEDIDFQYGGQARSILSSLEESIGKIDDFLSFERTFVHGDVVCSSSDPSGQMGRVTSVDVSVDLESVQGKKLKNVNSKKLMKICSISEGDYVIKGPWIGQVQRVVDRVIILFDDGTKCEVITLEKDQILPLTHNLLEDSQYPYYPGQRVKVKKTSTASKPARWLCGTWKDNHGEGTVCAVEAGLVYVNWFASVLFGSNLNVNVPLCWQDSKNMTSLSCFSHTNWQLGDWCMLPSVDQKEQMIQDASPCDPQNEHSKARGCKTSNIGELFIIEKIKTEVDVIWQNGEHTLGLDPVNLIPVNVINSHEFWPQQFVMEKGAYDDTLKPSNQRWGVVLSMDAKEHTVKVQWKNSPTSGTENLTRDTMMETVSAYELLEHPDYSCCFGDIVFKAAQKQLGDQADKDNVKSATDVIVEAPLINQDQISYQNKSVDSSYLSCIGNVTGFIDGDVEVKWATGLTTKVAPYEIFRIDKHEGSTATPVPYEANVEEFSQEMIDHRSLSSEQKGKTLLDCNGDRENCEKHPGESSSSSLPQAAIELFSTIKASILKTLSVASLSGKFSSIPRFEEGNESNCLDKKDLNTCDPDTDSHLVSKLQSSEGITPYCEVIGTHERNDFPVSLDNKSSDQLKQFDVIDNCSDHHFFDEGKGFSMSQVKKDWVKKVQQEWSILEKNLPERMDLMRAAIVGVSGTPYHDGLFFFDIHFPSEFPSQPPMVHYISGGLRLNPNLYESGKVCLSLLNTWTGTAAEVWNPGTSTILQVLLSLQALVLNEKPYFNEAGYDQQIGRAEGERNSVSYNENAFLVTCKSILYLLRKPPKHFEALVEEHFRQRSRHILLACKAYLEGAPIGCAFGGGNTENENQKGTSTGFKIMLAKLFPKLVEAFSDKGIDCSQFAEMQK 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00659 915 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 667 826 IPR000608 -
Vimu2g00659 915 Gene3D Ubiquitin Conjugating Enzyme 638 907 IPR016135 -
Vimu2g00659 915 SMART ubc_7 667 826 - -
Vimu2g00659 915 SUPERFAMILY UBC-like 669 835 IPR016135 -
Vimu2g00659 915 MobiDBLite consensus disorder prediction 10 24 - -
Vimu2g00659 915 Pfam Ubiquitin-conjugating enzyme 680 817 IPR000608 -
Vimu2g00659 915 CDD UBCc 677 821 IPR000608 -
Vimu2g00659 915 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 7 907 - -
Vimu2g00659 915 MobiDBLite consensus disorder prediction 1 24 - -
Vimu2g00659 915 FunFam Probable ubiquitin-conjugating enzyme E2 23 637 904 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00659 Vimu-Chr2 3888021 3892571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00659 22 909 Miscellaneous Gene Families AT2G33770 47.415 0.0 825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00659 K10581 - gmx:100805463 1529.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00659 2 3888021 3892571 Vimu2g00659 2 3888021 3892571 ECH