Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00645 ATGATTCTTCGCAGAATCGCAATCACGTGCAGATTATACTACACGAGCAGGACAAATAAACCGAGCCTGTACTCAAAAATCAGTCCCCTCGGAAATCCCAACACCAGTGTGGTTCCGGTGCTCGACGATTGGGTGTACAAGGGGAACAAGGTCCGAGTCGCAGAACTTCAACGCATCATTCGTGACCTTCGCAAACGCAGTAGGTTCTCCCAAGCCCTCCAGGTATCTGAGTGGATGTACATGAAGGGTGTGTGCATATTCTCTCCAACGGAACATGCGGTGCATTTGGATTTGATTGGCAATGTTCAAGGATTCTCTGCTGCAGAAATCTATTTTGATGCCTTGAGGGATAAAGACAAAACTCATCAGACCTATGGTGCTCTCTTGAATTGCTACGCTCGCCAGCGGGAAACTGACAAGGCCCTCTCACATTTTCAGAAAATGAAGGAGTTGGGGTTTGCTTCGTCTCCACTAACTTACAATGTCATTATGTGCATGTATGCAAAGATTGGACAGCATGAGAAGGTTGCTGATGTGCTAAGTGAGATGAAAATGAACCAAGTCATGCCTGACAACTTCAGCTACAGGATCTGTATAAATTCTTATGGTGTGAGGTCTGATTTTGGTGGAATGGAAAGAGTGTTGAAAGAGATGGAGACTCGACCAGACATTGTGATGGACTGGAACACTTACTCTATCGTGGCCAATTTTTATATAAAAGCTGGGTTTAGACGCGAGGCAGTTTCTGCCCTAAAGAAATCCGAGGAGAGGCTAGGTAACAAAGATGGCGAGGGTCACAATCACCTCATCTCCATGTATGCCCGACTTGAACTGAAAAAAGAGGTTATGAGAATATGGGAGTTGGAGAAAAGTTCTTGCAAGAGGTGCATAAACAGAGATTTCACAACCATGTTAGAATCTCTGGTAAAGCTTGGGGAGCTTGATGAAGCTGAGAAAATACTTACGGAATGGGAATCCTCCGGAAATTGTTATGATTTTGGAATCCCTAGTATTGTAATCATTGGGTATGCACAAAAAGGTTTGCATGAGAAAGCCGAGGCCATCCTCCTCGAGTTACAAAATAAGGAAAAGCTCACAAGCCCAAACTGTTGGTCGATGGTGGCAGGTGGATATCTTCACAAAGGTGACACGGAGAAGGCATTGGGGTGCTTTAAAACTGCCCTCTCTATGTACGTGGAAAATAAAGGATGGAAGCCGAATGCAAAGGTAGTCGCAGAACTGTTGCGTTGGATTGCTGATAACGGCAGTATTGAAGATGCAGAAGATTTCATCAGATTGTTAAGAAAGGCCGTCCCAGTGAATAGACAAGTATATCATACCCTAATCAAGACTTATGTGCGAGGTGGTAAAGAAGTGGATGAGCTTCTGGAGCACATGGAGAAAGATGGCATTGTTGAAAACGAAGAAACTAAGAAAATAATTAACATCAGGAGTGCATGA 1461 0.4415 MILRRIAITCRLYYTSRTNKPSLYSKISPLGNPNTSVVPVLDDWVYKGNKVRVAELQRIIRDLRKRSRFSQALQVSEWMYMKGVCIFSPTEHAVHLDLIGNVQGFSAAEIYFDALRDKDKTHQTYGALLNCYARQRETDKALSHFQKMKELGFASSPLTYNVIMCMYAKIGQHEKVADVLSEMKMNQVMPDNFSYRICINSYGVRSDFGGMERVLKEMETRPDIVMDWNTYSIVANFYIKAGFRREAVSALKKSEERLGNKDGEGHNHLISMYARLELKKEVMRIWELEKSSCKRCINRDFTTMLESLVKLGELDEAEKILTEWESSGNCYDFGIPSIVIIGYAQKGLHEKAEAILLELQNKEKLTSPNCWSMVAGGYLHKGDTEKALGCFKTALSMYVENKGWKPNAKVVAELLRWIADNGSIEDAEDFIRLLRKAVPVNRQVYHTLIKTYVRGGKEVDELLEHMEKDGIVENEETKKIINIRSA 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00645 486 PANTHER OS12G0527900 PROTEIN 19 472 - -
Vimu2g00645 486 NCBIfam pentatricopeptide repeat 301 330 IPR002885 -
Vimu2g00645 486 NCBIfam pentatricopeptide repeat 159 191 IPR002885 -
Vimu2g00645 486 NCBIfam pentatricopeptide repeat 124 153 IPR002885 -
Vimu2g00645 486 Gene3D Tetratricopeptide repeat domain 52 265 IPR011990 GO:0005515
Vimu2g00645 486 Pfam PPR repeat 124 153 IPR002885 -
Vimu2g00645 486 Pfam PPR repeat 301 328 IPR002885 -
Vimu2g00645 486 Pfam PPR repeat 371 392 IPR002885 -
Vimu2g00645 486 Pfam PPR repeat 338 361 IPR002885 -
Vimu2g00645 486 SUPERFAMILY TPR-like 112 430 IPR011990 GO:0005515
Vimu2g00645 486 Gene3D Tetratricopeptide repeat domain 397 482 IPR011990 GO:0005515
Vimu2g00645 486 Gene3D Tetratricopeptide repeat domain 287 396 IPR011990 GO:0005515
Vimu2g00645 486 FunFam Pentatricopeptide repeat-containing protein mitochondrial 53 264 - -
Vimu2g00645 486 Pfam PPR repeat family 159 202 IPR002885 -
Vimu2g00645 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 190 IPR002885 -
Vimu2g00645 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00645 Vimu-Chr2 3836317 3838212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00645 22 449 EF-hand Containing Proteins AT1G02150 31.235 1.14e-71 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00645 - - gmx:100805658 824.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00645 2 3836317 3838212 Vimu2g00645 2 3836317 3838212 ECH